View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_high_30 (Length: 286)
Name: NF18549_high_30
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 33736838 - 33737088
Alignment:
| Q |
18 |
gaagagggggagaatgttgatgttagcagtagcatatgtcattgaccttcttgttagttctagttatgcactttgttgatgaatttgtctctccccttag |
117 |
Q |
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| T |
33736838 |
gaagagagggagaatgttgatgttagcagtagcatatgtcat-gaccttcttgttagttctagttatgcactttgttgatgaatttgtctcttcccttag |
33736936 |
T |
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| Q |
118 |
tgttatgtccagattaaataatgttttagttgctgctttgtggtcttctactagacctcgacctatcagtaacaaccaattgaattaaaatttggtatac |
217 |
Q |
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| T |
33736937 |
tgttatgtccagattaaataatgttttagttgctgctttgtggtcttctactagacctcgacctatcagtaacaaccaattgaattaaaatttggtatac |
33737036 |
T |
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| Q |
218 |
ttgaagaatgtgatagaatctcagaaaatcatatcatgtaggaagttatgct |
269 |
Q |
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| T |
33737037 |
ttgaagaatgtgatagaatctcagaaaatcatatcatgtaggaagttatgct |
33737088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 33621247 - 33621296
Alignment:
| Q |
210 |
tggtatacttgaagaatgtgatagaatctcagaaaatcatatcatgtagga |
260 |
Q |
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| T |
33621247 |
tggtatacgtgaagaatgtgatagt-tctcaaaaaatcatatcatgtagga |
33621296 |
T |
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