View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_high_35 (Length: 263)
Name: NF18549_high_35
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 34901348 - 34901088
Alignment:
| Q |
1 |
tttattaacaaaacatgggtaatgtttatacattacaccatctggtaaaccgtaaaccaacttataatagggagcaaaacaaccatcaataaggaaagca |
100 |
Q |
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| T |
34901348 |
tttattaacaaaacatgggtaatgtttatacattacaccatctggtaaaccgtaaaccaacttataatagggagcaaaacaaccatcaataaggaaagca |
34901249 |
T |
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| Q |
101 |
aataaatagtccaaaacactcaagttgtggctttgaaaaatgagtaaatagttcattatcaagcaccacaaattatctccaaattttactaaattgattt |
200 |
Q |
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| T |
34901248 |
aataaatagtccaaaacactcaagttgtggctttgaaaaatgagtaaatagttcattatcaagcaccacaaattatctccaaattttactaaattgattt |
34901149 |
T |
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| Q |
201 |
tacataatggtgtcataattgcagtcctcaatgtgatactcacaaacttcaagaaggactt |
261 |
Q |
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| T |
34901148 |
tacataatggtgtcataattgcagtcctcaatgtgatactcacaaacttcaagaaggactt |
34901088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 75 - 231
Target Start/End: Complemental strand, 34905737 - 34905586
Alignment:
| Q |
75 |
caaaacaaccatcaataaggaaagcaaataaatagtccaaaacactcaagttgtggctttgaaaaa-tgagtaaatagttcattatcaagcaccacaaat |
173 |
Q |
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| T |
34905737 |
caaaacaaccatcaataa---aagcaaataaatagtcaaaaacact--agttgtggctttaaaaaaatgag-aaatagttcattatcaagcaacacaact |
34905644 |
T |
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| Q |
174 |
tatctccaaattttactaaattgattttacataatggtgtcataattgcagtcctcaa |
231 |
Q |
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| T |
34905643 |
agacttcaatttttactaaattgattttacataataatgtcagaattgcagtcctcaa |
34905586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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