View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_high_39 (Length: 246)
Name: NF18549_high_39
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 46937849 - 46938078
Alignment:
| Q |
1 |
catcactttcaatgaccaatcctacgaattttcattttaatctttaacaagtaccaacctggccaggcgtaattagtcccttctcctctgcatcagcaat |
100 |
Q |
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| T |
46937849 |
catcactttcaatgaccaatcctacgaattttcattttaatctttaacaagtaccaacctggccaggcgtaattagtcccttctcctctgcatcagcaat |
46937948 |
T |
|
| Q |
101 |
catactatagccaatcctacatttataacatacattgcaaaggcg-aaaaagtcaaaagccaattcaaaagaatgttgctcacaaaagcaagaaccaaaa |
199 |
Q |
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| T |
46937949 |
catactatagccaatcctacatttataacatacattgcaaaggcgaaaaaagtcacaagccaattcaaaagaatgttgctcacaaaagcaagaaccaaaa |
46938048 |
T |
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| Q |
200 |
ctcaaataatatatgagtactattggaaga |
229 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
46938049 |
ctcaaataatatatgagtactattggaaga |
46938078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 861772 - 861707
Alignment:
| Q |
53 |
accaacctggccaggcgtaattagtcccttctcctctgcatcagcaatcatactatagccaatcct |
118 |
Q |
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||||||||| ||||| || || || |||||||| |||||||||||||||||||| ||||||||||| |
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| T |
861772 |
accaacctgtccaggtgtgataagccccttctcttctgcatcagcaatcatactgtagccaatcct |
861707 |
T |
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