View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_high_42 (Length: 243)
Name: NF18549_high_42
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 43406955 - 43406733
Alignment:
| Q |
15 |
caaatcacccttaatggtacaggtaagcactattaatattattgcaacagtaacaccagaaaaaccaagacaatggagaatcttaattattcctatctca |
114 |
Q |
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| T |
43406955 |
caaatcacccttaatggtacaggtaagcactattaatattattgcaacagtaacaccaaaaaaaccaagacaacggagaatcttaattattcctatctca |
43406856 |
T |
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| Q |
115 |
tacaacgttttcnnnnnnngacaaaatctaacacaacggtttgtgattaaacacgttctaaggtctattcatagac------cactgatgataggtatgt |
208 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43406855 |
tacaacgttttctttttttgacaaaatctaacacaacggtttgtgattaaacacgttctaaggtctattcatagaccactggcactgatgataggtatgt |
43406756 |
T |
|
| Q |
209 |
actagctggtttagttttagaat |
231 |
Q |
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||||||| ||||||||||||||| |
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| T |
43406755 |
actagctagtttagttttagaat |
43406733 |
T |
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