View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18549_high_49 (Length: 203)

Name: NF18549_high_49
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18549_high_49
NF18549_high_49
[»] chr8 (20 HSPs)
chr8 (1-203)||(14699286-14699488)
chr8 (165-203)||(8951429-8951467)
chr8 (173-203)||(14584132-14584162)
chr8 (167-201)||(28965730-28965764)
chr8 (51-89)||(33199556-33199594)
chr8 (60-98)||(43516263-43516301)
chr8 (166-203)||(33745896-33745933)
chr8 (167-203)||(51096-51132)
chr8 (167-203)||(1774342-1774378)
chr8 (167-203)||(2944273-2944309)
chr8 (167-203)||(8251934-8251970)
chr8 (173-201)||(8797034-8797062)
chr8 (167-203)||(13153928-13153964)
chr8 (167-203)||(18754144-18754180)
chr8 (167-203)||(28192176-28192212)
chr8 (167-203)||(28572046-28572082)
chr8 (167-203)||(28579639-28579675)
chr8 (167-203)||(32675758-32675794)
chr8 (167-203)||(34568490-34568526)
chr8 (167-203)||(39029178-39029214)
[»] chr7 (19 HSPs)
chr7 (167-203)||(36711299-36711335)
chr7 (164-203)||(32872376-32872415)
chr7 (173-203)||(32643758-32643788)
chr7 (166-203)||(21295150-21295187)
chr7 (162-203)||(36698132-36698173)
chr7 (166-203)||(41026097-41026134)
chr7 (166-203)||(41252362-41252399)
chr7 (166-203)||(48521028-48521065)
chr7 (167-203)||(9140534-9140570)
chr7 (167-203)||(19920563-19920599)
chr7 (167-203)||(26255096-26255132)
chr7 (160-200)||(28060981-28061021)
chr7 (167-203)||(29286038-29286074)
chr7 (167-203)||(32814433-32814469)
chr7 (167-203)||(33858867-33858903)
chr7 (167-203)||(38858298-38858334)
chr7 (167-203)||(39197718-39197754)
chr7 (167-203)||(39871614-39871650)
chr7 (167-203)||(40300230-40300266)
[»] chr6 (10 HSPs)
chr6 (167-203)||(925934-925970)
chr6 (51-103)||(9363119-9363171)
chr6 (173-203)||(6147389-6147419)
chr6 (167-203)||(231106-231142)
chr6 (167-203)||(4844400-4844436)
chr6 (167-203)||(8743188-8743224)
chr6 (167-203)||(12106065-12106101)
chr6 (167-203)||(29036126-29036162)
chr6 (167-203)||(30248647-30248683)
chr6 (167-203)||(34301833-34301869)
[»] chr5 (15 HSPs)
chr5 (167-203)||(3497801-3497837)
chr5 (159-203)||(22527684-22527728)
chr5 (167-203)||(25601061-25601097)
chr5 (173-203)||(13759448-13759478)
chr5 (166-203)||(9828392-9828429)
chr5 (170-203)||(32478141-32478174)
chr5 (167-203)||(1265949-1265985)
chr5 (167-203)||(6673229-6673265)
chr5 (167-203)||(7951562-7951598)
chr5 (167-203)||(14913648-14913684)
chr5 (167-203)||(16127259-16127295)
chr5 (167-203)||(26894874-26894910)
chr5 (167-203)||(27873346-27873382)
chr5 (167-203)||(34662204-34662240)
chr5 (167-203)||(40004410-40004446)
[»] chr3 (24 HSPs)
chr3 (167-203)||(26306608-26306644)
chr3 (167-201)||(9780244-9780278)
chr3 (166-203)||(9499498-9499535)
chr3 (163-200)||(31531415-31531452)
chr3 (167-203)||(1111649-1111685)
chr3 (167-203)||(4024052-4024088)
chr3 (167-203)||(7181350-7181386)
chr3 (167-203)||(10220933-10220969)
chr3 (167-203)||(12050393-12050429)
chr3 (167-203)||(14428610-14428646)
chr3 (60-92)||(18088068-18088100)
chr3 (167-203)||(21756486-21756522)
chr3 (167-203)||(22103930-22103966)
chr3 (167-203)||(25149123-25149159)
chr3 (167-203)||(26593766-26593802)
chr3 (167-203)||(30041018-30041054)
chr3 (167-203)||(32467425-32467461)
chr3 (167-203)||(35868084-35868120)
chr3 (167-203)||(37728713-37728749)
chr3 (167-203)||(43868103-43868139)
chr3 (167-203)||(44543782-44543818)
chr3 (167-203)||(45252773-45252809)
chr3 (167-203)||(46049987-46050023)
chr3 (167-203)||(51284063-51284099)
[»] chr1 (25 HSPs)
chr1 (167-203)||(14090239-14090275)
chr1 (51-137)||(9168367-9168453)
chr1 (166-203)||(1039382-1039419)
chr1 (166-203)||(1046288-1046325)
chr1 (60-97)||(28665118-28665155)
chr1 (167-203)||(943638-943674)
chr1 (167-203)||(4102715-4102751)
chr1 (173-201)||(11353065-11353093)
chr1 (167-203)||(11741397-11741433)
chr1 (167-203)||(15811233-15811269)
chr1 (173-201)||(15892566-15892594)
chr1 (167-203)||(23541979-23542015)
chr1 (164-200)||(23542243-23542279)
chr1 (167-203)||(30290265-30290301)
chr1 (173-201)||(34931085-34931113)
chr1 (167-203)||(36694854-36694890)
chr1 (167-203)||(36710955-36710991)
chr1 (167-203)||(37951950-37951986)
chr1 (167-203)||(39363195-39363231)
chr1 (167-203)||(39497433-39497469)
chr1 (167-203)||(44649629-44649665)
chr1 (167-203)||(45039412-45039448)
chr1 (167-203)||(46075868-46075904)
chr1 (167-203)||(49907021-49907057)
chr1 (167-203)||(52431175-52431211)
[»] chr4 (21 HSPs)
chr4 (164-203)||(5375558-5375597)
chr4 (164-203)||(44294786-44294825)
chr4 (173-203)||(468506-468536)
chr4 (167-201)||(1028518-1028552)
chr4 (165-203)||(9328241-9328279)
chr4 (173-203)||(36130091-36130121)
chr4 (173-203)||(37518010-37518040)
chr4 (173-203)||(37522226-37522256)
chr4 (173-203)||(50451226-50451256)
chr4 (166-203)||(33413517-33413554)
chr4 (167-203)||(4035825-4035861)
chr4 (164-200)||(4036089-4036125)
chr4 (167-203)||(5743660-5743696)
chr4 (173-201)||(23777805-23777833)
chr4 (167-203)||(26626003-26626039)
chr4 (167-203)||(30771528-30771564)
chr4 (167-203)||(32032994-32033030)
chr4 (167-203)||(34273220-34273256)
chr4 (167-203)||(45742807-45742843)
chr4 (167-203)||(47806860-47806896)
chr4 (167-203)||(52977982-52978018)
[»] chr2 (14 HSPs)
chr2 (161-203)||(20252204-20252246)
chr2 (60-97)||(29408976-29409013)
chr2 (166-203)||(36131029-36131066)
chr2 (167-203)||(2438225-2438261)
chr2 (167-203)||(7491844-7491880)
chr2 (167-203)||(8716893-8716929)
chr2 (167-203)||(11201683-11201719)
chr2 (167-203)||(16669626-16669662)
chr2 (167-203)||(17408295-17408331)
chr2 (167-203)||(27560206-27560242)
chr2 (167-203)||(34062666-34062702)
chr2 (167-203)||(34883849-34883885)
chr2 (167-203)||(40607702-40607738)
chr2 (167-203)||(41450516-41450552)
[»] scaffold0121 (1 HSPs)
scaffold0121 (162-203)||(24631-24672)
[»] scaffold0029 (1 HSPs)
scaffold0029 (158-203)||(51683-51728)
[»] scaffold0604 (1 HSPs)
scaffold0604 (167-203)||(3783-3819)
[»] scaffold0122 (1 HSPs)
scaffold0122 (167-203)||(12065-12101)
[»] scaffold0012 (1 HSPs)
scaffold0012 (167-203)||(47640-47676)
[»] scaffold0009 (1 HSPs)
scaffold0009 (173-201)||(246462-246490)
[»] scaffold0008 (1 HSPs)
scaffold0008 (167-203)||(259123-259159)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 3e-99; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 14699286 - 14699488
Alignment:
Q  1 catactctagttgtctatattgcaaaatatttacctaaagaccataccgaatgttaatgatacaaatacaaaatagagaaagagagaataggaacaataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14699286 catactctagttgtctatattgcaaaatatttacctaaagaccataccgaatgttaatgatacaaatacaaaatagagaaagagagaataggaacaataa 14699385  T
Q  101 tgtaagttagggttttataaaatattaatatcttgatgttaaaaacggttacaagataataatatgtactctctccgttcctaattataagacccttttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||| ||||||||||||| |||||||    
T  14699386 tgtaagttagggttttataaaatattaatatcttgatgttaaaaacggttacaagataatactatgtacttcctccgtccctaattataagatccttttg 14699485  T
Q  201 aga 203  Q
    |||    
T  14699486 aga 14699488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 8951467 - 8951429
Alignment:
Q  165 tgtactctctccgttcctaattataagacccttttgaga 203  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  8951467 tgtactccctccgtccctaattataagacccttttgaga 8951429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 14584162 - 14584132
Alignment:
Q  173 ctccgttcctaattataagacccttttgaga 203  Q
    |||||||||||||||||||||||||||||||    
T  14584162 ctccgttcctaattataagacccttttgaga 14584132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 28965764 - 28965730
Alignment:
Q  167 tactctctccgttcctaattataagacccttttga 201  Q
    |||||||||||| ||||||||||||||||||||||    
T  28965764 tactctctccgtccctaattataagacccttttga 28965730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 33199594 - 33199556
Alignment:
Q  51 atgttaatgatacaaatacaaaatagagaaagagagaat 89  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  33199594 atgttaataatacaaatacaaaataaagaaagagagaat 33199556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 43516301 - 43516263
Alignment:
Q  60 atacaaatacaaaatagagaaagagagaataggaacaat 98  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  43516301 atacatatacaaaatagagaaacagagaataggaacaat 43516263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 33745933 - 33745896
Alignment:
Q  166 gtactctctccgttcctaattataagacccttttgaga 203  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  33745933 gtactccctccgttcctaattataagatccttttgaga 33745896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 51132 - 51096
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  51132 tactccctccgtccctaattataagacccttttgaga 51096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 1774342 - 1774378
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  1774342 tactccctccgtccctaattataagacccttttgaga 1774378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 2944309 - 2944273
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  2944309 tactccctccgtccctaattataagacccttttgaga 2944273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 8251970 - 8251934
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  8251970 tactccctccgtccctaattataagacccttttgaga 8251934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 8797034 - 8797062
Alignment:
Q  173 ctccgttcctaattataagacccttttga 201  Q
    |||||||||||||||||||||||||||||    
T  8797034 ctccgttcctaattataagacccttttga 8797062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 13153928 - 13153964
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  13153928 tactccctccgtccctaattataagacccttttgaga 13153964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 18754144 - 18754180
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  18754144 tactccctccgtccctaattataagacccttttgaga 18754180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 28192212 - 28192176
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  28192212 tactccctccgtccctaattataagacccttttgaga 28192176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 28572046 - 28572082
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  28572046 tactccctccgtccctaattataagacccttttgaga 28572082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 28579639 - 28579675
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  28579639 tactccctccgtccctaattataagacccttttgaga 28579675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 32675794 - 32675758
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  32675794 tactccctccgtccctaattataagacccttttgaga 32675758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 34568490 - 34568526
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  34568490 tactccctccgtccctaattataagacccttttgaga 34568526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 39029178 - 39029214
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  39029178 tactccctccgtccctaattataagacccttttgaga 39029214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 36711335 - 36711299
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||||||||||||||||||||||||||||    
T  36711335 tactccctccgttcctaattataagacccttttgaga 36711299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 32872415 - 32872376
Alignment:
Q  164 atgtactctctccgttcctaattataagacccttttgaga 203  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  32872415 atgtactccctccgtccctaattataagacccttttgaga 32872376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 32643788 - 32643758
Alignment:
Q  173 ctccgttcctaattataagacccttttgaga 203  Q
    |||||||||||||||||||||||||||||||    
T  32643788 ctccgttcctaattataagacccttttgaga 32643758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 21295150 - 21295187
Alignment:
Q  166 gtactctctccgttcctaattataagacccttttgaga 203  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  21295150 gtactccctccgtccctaattataagacccttttgaga 21295187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 36698173 - 36698132
Alignment:
Q  162 atatgtactctctccgttcctaattataagacccttttgaga 203  Q
    |||| ||||| |||||| ||||||||||||||||||||||||    
T  36698173 atatatactccctccgtccctaattataagacccttttgaga 36698132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 41026134 - 41026097
Alignment:
Q  166 gtactctctccgttcctaattataagacccttttgaga 203  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  41026134 gtactccctccgtccctaattataagacccttttgaga 41026097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 41252399 - 41252362
Alignment:
Q  166 gtactctctccgttcctaattataagacccttttgaga 203  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  41252399 gtactccctccgtccctaattataagacccttttgaga 41252362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 48521028 - 48521065
Alignment:
Q  166 gtactctctccgttcctaattataagacccttttgaga 203  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  48521028 gtactccctccgtccctaattataagacccttttgaga 48521065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 9140570 - 9140534
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  9140570 tactatctccgtccctaattataagacccttttgaga 9140534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 19920563 - 19920599
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  19920563 tactccctccgtccctaattataagacccttttgaga 19920599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 26255096 - 26255132
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  26255096 tactccctccgtccctaattataagacccttttgaga 26255132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 28061021 - 28060981
Alignment:
Q  160 taatatgtactctctccgttcctaattataagacccttttg 200  Q
    |||||| ||||| |||||| |||||||||||||||||||||    
T  28061021 taatatatactccctccgtccctaattataagacccttttg 28060981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 29286074 - 29286038
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  29286074 tactccctccgtccctaattataagacccttttgaga 29286038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 32814433 - 32814469
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  32814433 tactccctccgtccctaattataagacccttttgaga 32814469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 33858903 - 33858867
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  33858903 tactccctccgtccctaattataagacccttttgaga 33858867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 38858298 - 38858334
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  38858298 tactccctccgtccctaattataagacccttttgaga 38858334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 39197718 - 39197754
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  39197718 tactccctccgtccctaattataagacccttttgaga 39197754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 39871650 - 39871614
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  39871650 tactccctccgtccctaattataagacccttttgaga 39871614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 40300230 - 40300266
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  40300230 tactccctccgtccctaattataagacccttttgaga 40300266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 925970 - 925934
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||||||||||||||||||||||||||||    
T  925970 tactccctccgttcctaattataagacccttttgaga 925934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 9363119 - 9363171
Alignment:
Q  51 atgttaatgatacaaatacaaaatagagaaagagagaataggaacaataatgt 103  Q
    |||||||  ||||||||||||||| | |||||||||||||||||||| |||||    
T  9363119 atgttaacaatacaaatacaaaatcgtgaaagagagaataggaacaacaatgt 9363171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Original strand, 6147389 - 6147419
Alignment:
Q  173 ctccgttcctaattataagacccttttgaga 203  Q
    |||||||||||||||||||||||||||||||    
T  6147389 ctccgttcctaattataagacccttttgaga 6147419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 231142 - 231106
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  231142 tactccctccgtccctaattataagacccttttgaga 231106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 4844400 - 4844436
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  4844400 tactccctccgtccctaattataagacccttttgaga 4844436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 8743188 - 8743224
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  8743188 tactccctccgtccctaattataagacccttttgaga 8743224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 12106101 - 12106065
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  12106101 tactctctccgtccctaattataagacctttttgaga 12106065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 29036126 - 29036162
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  29036126 tactccctccgttcctaattataagatccttttgaga 29036162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 30248647 - 30248683
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  30248647 tactccctccgtccctaattataagacccttttgaga 30248683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 34301869 - 34301833
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  34301869 tactccctccgtccctaattataagacccttttgaga 34301833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 3497837 - 3497801
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||||||||||||||||||||||||||||    
T  3497837 tactccctccgttcctaattataagacccttttgaga 3497801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 22527684 - 22527728
Alignment:
Q  159 ataatatgtactctctccgttcctaattataagacccttttgaga 203  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||    
T  22527684 ataatatatactccctccgtccctaattataagacccttttgaga 22527728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 25601097 - 25601061
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||||||||||||||||||||||||||||    
T  25601097 tactccctccgttcctaattataagacccttttgaga 25601061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 13759478 - 13759448
Alignment:
Q  173 ctccgttcctaattataagacccttttgaga 203  Q
    |||||||||||||||||||||||||||||||    
T  13759478 ctccgttcctaattataagacccttttgaga 13759448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 9828392 - 9828429
Alignment:
Q  166 gtactctctccgttcctaattataagacccttttgaga 203  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  9828392 gtactccctccgtccctaattataagacccttttgaga 9828429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 32478141 - 32478174
Alignment:
Q  170 tctctccgttcctaattataagacccttttgaga 203  Q
    ||||||||| ||||||||||||||||||||||||    
T  32478141 tctctccgtccctaattataagacccttttgaga 32478174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 1265949 - 1265985
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  1265949 tactccctccgtccctaattataagacccttttgaga 1265985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 6673265 - 6673229
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  6673265 tactccctccgtccctaattataagacccttttgaga 6673229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 7951562 - 7951598
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  7951562 tactccctccgtccctaattataagacccttttgaga 7951598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 14913648 - 14913684
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  14913648 tactccctccgtccctaattataagacccttttgaga 14913684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 16127259 - 16127295
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  16127259 tactccctccgtccctaattataagacccttttgaga 16127295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 26894910 - 26894874
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  26894910 tactccctccgtccctaattataagacccttttgaga 26894874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 27873382 - 27873346
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  27873382 tactatctccgtccctaattataagacccttttgaga 27873346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 34662204 - 34662240
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  34662204 tactccctccgtccctaattataagacccttttgaga 34662240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 40004446 - 40004410
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  40004446 tactccctccgtccctaattataagacccttttgaga 40004410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 26306644 - 26306608
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||||||||||||||||||||||||||||    
T  26306644 tactccctccgttcctaattataagacccttttgaga 26306608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 9780278 - 9780244
Alignment:
Q  167 tactctctccgttcctaattataagacccttttga 201  Q
    |||||||||||| ||||||||||||||||||||||    
T  9780278 tactctctccgtccctaattataagacccttttga 9780244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 9499535 - 9499498
Alignment:
Q  166 gtactctctccgttcctaattataagacccttttgaga 203  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  9499535 gtactccctccgtccctaattataagacccttttgaga 9499498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 31531452 - 31531415
Alignment:
Q  163 tatgtactctctccgttcctaattataagacccttttg 200  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  31531452 tatgtactccctccgtccctaattataagacccttttg 31531415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 1111685 - 1111649
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  1111685 tactatctccgtccctaattataagacccttttgaga 1111649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 4024052 - 4024088
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  4024052 tactccctccgtccctaattataagacccttttgaga 4024088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 7181350 - 7181386
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  7181350 tactccctccgtccctaattataagacccttttgaga 7181386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 10220933 - 10220969
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  10220933 tactccctccgtccctaattataagacccttttgaga 10220969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 12050429 - 12050393
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  12050429 tactccctccgtccctaattataagacccttttgaga 12050393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 14428610 - 14428646
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  14428610 tactccctccgtccctaattataagacccttttgaga 14428646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 18088068 - 18088100
Alignment:
Q  60 atacaaatacaaaatagagaaagagagaatagg 92  Q
    |||| ||||||||||||||||||||||||||||    
T  18088068 ataccaatacaaaatagagaaagagagaatagg 18088100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 21756486 - 21756522
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  21756486 tactccctccgtccctaattataagacccttttgaga 21756522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 22103966 - 22103930
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  22103966 tactccctccgtccctaattataagacccttttgaga 22103930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 25149159 - 25149123
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  25149159 tactccctccgtccctaattataagacccttttgaga 25149123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 26593802 - 26593766
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  26593802 tactccctccgtccctaattataagacccttttgaga 26593766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 30041054 - 30041018
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  30041054 tactccctccgttcctaattataagactcttttgaga 30041018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 32467425 - 32467461
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    |||||||||||| | ||||||||||||||||||||||    
T  32467425 tactctctccgtccttaattataagacccttttgaga 32467461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 35868120 - 35868084
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  35868120 tactccctccgtccctaattataagacccttttgaga 35868084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 37728713 - 37728749
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  37728713 tactccctccgtccctaattataagacccttttgaga 37728749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 43868103 - 43868139
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  43868103 tactccctccgtccctaattataagacccttttgaga 43868139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 44543782 - 44543818
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  44543782 tactccctccgtccctaattataagacccttttgaga 44543818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 45252773 - 45252809
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  45252773 tactccctccgtccctaattataagacccttttgaga 45252809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 46050023 - 46049987
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  46050023 tactccctccgtccctaattataagacccttttgaga 46049987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 51284099 - 51284063
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  51284099 tactccctccgtccctaattataagacccttttgaga 51284063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 14090275 - 14090239
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||||||||||||||| |||||||||||||||||||    
T  14090275 tactctctccgttcctatttataagacccttttgaga 14090239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 9168367 - 9168453
Alignment:
Q  51 atgttaatgatacaaatacaaaatagagaaagagagaataggaacaataatgtaagttagggttttataaaatattaatatcttgat 137  Q
    |||||||  ||||| ||||||||||||||||||||||||| || ||| || |   | |||||||| ||||||||| |||| ||||||    
T  9168367 atgttaacaatacatatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgat 9168453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 1039419 - 1039382
Alignment:
Q  166 gtactctctccgttcctaattataagacccttttgaga 203  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  1039419 gtactccctccgtccctaattataagacccttttgaga 1039382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 1046325 - 1046288
Alignment:
Q  166 gtactctctccgttcctaattataagacccttttgaga 203  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  1046325 gtactccctccgtccctaattataagacccttttgaga 1046288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 28665155 - 28665118
Alignment:
Q  60 atacaaatacaaaatagagaaagagagaataggaacaa 97  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  28665155 atacagatacaaaatggagaaagagagaataggaacaa 28665118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 943674 - 943638
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  943674 tactccctccgtccctaattataagacccttttgaga 943638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 4102751 - 4102715
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  4102751 tactccctccgtccctaattataagacccttttgaga 4102715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 11353093 - 11353065
Alignment:
Q  173 ctccgttcctaattataagacccttttga 201  Q
    |||||||||||||||||||||||||||||    
T  11353093 ctccgttcctaattataagacccttttga 11353065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 11741397 - 11741433
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  11741397 tactccctccgtccctaattataagacccttttgaga 11741433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 15811269 - 15811233
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  15811269 tactccctccgtccctaattataagacccttttgaga 15811233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 15892594 - 15892566
Alignment:
Q  173 ctccgttcctaattataagacccttttga 201  Q
    |||||||||||||||||||||||||||||    
T  15892594 ctccgttcctaattataagacccttttga 15892566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 23541979 - 23542015
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  23541979 tactccctccgtccctaattataagacccttttgaga 23542015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 23542279 - 23542243
Alignment:
Q  164 atgtactctctccgttcctaattataagacccttttg 200  Q
    |||||||| |||||| |||||||||||||||||||||    
T  23542279 atgtactccctccgtccctaattataagacccttttg 23542243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 30290265 - 30290301
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  30290265 tactccctccgtccctaattataagacccttttgaga 30290301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 34931085 - 34931113
Alignment:
Q  173 ctccgttcctaattataagacccttttga 201  Q
    |||||||||||||||||||||||||||||    
T  34931085 ctccgttcctaattataagacccttttga 34931113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 36694854 - 36694890
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  36694854 tactccctccgtccctaattataagacccttttgaga 36694890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 36710955 - 36710991
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  36710955 tactccctccgtccctaattataagacccttttgaga 36710991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 37951986 - 37951950
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  37951986 tactccctccgtccctaattataagacccttttgaga 37951950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 39363231 - 39363195
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  39363231 tactccctccgtccctaattataagacccttttgaga 39363195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 39497433 - 39497469
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  39497433 tactccctccgtccctaattataagacccttttgaga 39497469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 44649629 - 44649665
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  44649629 tactccctccgtccctaattataagacccttttgaga 44649665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 45039412 - 45039448
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  45039412 tactccctccgtccctaattataagacccttttgaga 45039448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 46075904 - 46075868
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  46075904 tactccctccgtccctaattataagacccttttgaga 46075868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 49907021 - 49907057
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  49907021 tactccctccgtccctaattataagacccttttgaga 49907057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 52431211 - 52431175
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  52431211 tactccctccgtccctaattataagacccttttgaga 52431175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 5375597 - 5375558
Alignment:
Q  164 atgtactctctccgttcctaattataagacccttttgaga 203  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  5375597 atgtactccctccgtccctaattataagacccttttgaga 5375558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 44294786 - 44294825
Alignment:
Q  164 atgtactctctccgttcctaattataagacccttttgaga 203  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  44294786 atgtactccctccgtccctaattataagacccttttgaga 44294825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 468536 - 468506
Alignment:
Q  173 ctccgttcctaattataagacccttttgaga 203  Q
    |||||||||||||||||||||||||||||||    
T  468536 ctccgttcctaattataagacccttttgaga 468506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 1028518 - 1028552
Alignment:
Q  167 tactctctccgttcctaattataagacccttttga 201  Q
    ||||| |||||||||||||||||||||||||||||    
T  1028518 tactccctccgttcctaattataagacccttttga 1028552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 9328279 - 9328241
Alignment:
Q  165 tgtactctctccgttcctaattataagacccttttgaga 203  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  9328279 tgtactccctccgtccctaattataagacccttttgaga 9328241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 36130121 - 36130091
Alignment:
Q  173 ctccgttcctaattataagacccttttgaga 203  Q
    |||||||||||||||||||||||||||||||    
T  36130121 ctccgttcctaattataagacccttttgaga 36130091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Original strand, 37518010 - 37518040
Alignment:
Q  173 ctccgttcctaattataagacccttttgaga 203  Q
    |||||||||||||||||||||||||||||||    
T  37518010 ctccgttcctaattataagacccttttgaga 37518040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Original strand, 37522226 - 37522256
Alignment:
Q  173 ctccgttcctaattataagacccttttgaga 203  Q
    |||||||||||||||||||||||||||||||    
T  37522226 ctccgttcctaattataagacccttttgaga 37522256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 50451256 - 50451226
Alignment:
Q  173 ctccgttcctaattataagacccttttgaga 203  Q
    |||||||||||||||||||||||||||||||    
T  50451256 ctccgttcctaattataagacccttttgaga 50451226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 33413517 - 33413554
Alignment:
Q  166 gtactctctccgttcctaattataagacccttttgaga 203  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  33413517 gtactccctccgtccctaattataagacccttttgaga 33413554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 4035825 - 4035861
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  4035825 tactccctccgtccctaattataagacccttttgaga 4035861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 4036125 - 4036089
Alignment:
Q  164 atgtactctctccgttcctaattataagacccttttg 200  Q
    |||||||| |||||| |||||||||||||||||||||    
T  4036125 atgtactccctccgtccctaattataagacccttttg 4036089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 5743696 - 5743660
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  5743696 tactccctccgtccctaattataagacccttttgaga 5743660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 23777833 - 23777805
Alignment:
Q  173 ctccgttcctaattataagacccttttga 201  Q
    |||||||||||||||||||||||||||||    
T  23777833 ctccgttcctaattataagacccttttga 23777805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 26626039 - 26626003
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  26626039 tactccctccgtccctaattataagacccttttgaga 26626003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 30771528 - 30771564
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  30771528 tactccctccgtccctaattataagacccttttgaga 30771564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 32033030 - 32032994
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  32033030 tactccctccgtccctaattataagacccttttgaga 32032994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 34273256 - 34273220
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  34273256 tactccctccgtccctaattataagacccttttgaga 34273220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 45742843 - 45742807
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  45742843 tactccctccgtccctaattataagacccttttgaga 45742807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 47806860 - 47806896
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  47806860 tactccctccgtccctaattataagacccttttgaga 47806896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 52977982 - 52978018
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  52977982 tactccctccgtccctaattataagacccttttgaga 52978018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 20252204 - 20252246
Alignment:
Q  161 aatatgtactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||    
T  20252204 aatatatactccctccgtccctaattataagacccttttgaga 20252246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 29408976 - 29409013
Alignment:
Q  60 atacaaatacaaaatagagaaagagagaataggaacaa 97  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  29408976 atacatatacaaaatagagaaagagagaataagaacaa 29409013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 36131066 - 36131029
Alignment:
Q  166 gtactctctccgttcctaattataagacccttttgaga 203  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  36131066 gtactccctccgtccctaattataagacccttttgaga 36131029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 2438225 - 2438261
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  2438225 tactccctccgtccctaattataagacccttttgaga 2438261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 7491844 - 7491880
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  7491844 tactccctccgtccctaattataagacccttttgaga 7491880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 8716929 - 8716893
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  8716929 tactccctccgtccctaattataagacccttttgaga 8716893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 11201683 - 11201719
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  11201683 tactccctccgtccctaattataagacccttttgaga 11201719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 16669626 - 16669662
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  16669626 tactccctccgttcttaattataagacccttttgaga 16669662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 17408331 - 17408295
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  17408331 tactccctccgtccctaattataagacccttttgaga 17408295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 27560206 - 27560242
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  27560206 tactccctccgtccctaattataagacccttttgaga 27560242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 34062702 - 34062666
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  34062702 tactccctccgtccctaattataagacccttttgaga 34062666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 34883885 - 34883849
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  34883885 tactccctccgtccctaattataagacccttttgaga 34883849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 40607702 - 40607738
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  40607702 tactccctccgtccctaattataagacccttttgaga 40607738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 41450516 - 41450552
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  41450516 tactccctccgtccctaattataagacccttttgaga 41450552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 24672 - 24631
Alignment:
Q  162 atatgtactctctccgttcctaattataagacccttttgaga 203  Q
    |||| ||||| |||||||||||||||||||| ||||||||||    
T  24672 atatatactccctccgttcctaattataagatccttttgaga 24631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 51728 - 51683
Alignment:
Q  158 aataatatgtactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| || ||||| |||||| ||||||||||||||||||||||||    
T  51728 aataacatatactccctccgtccctaattataagacccttttgaga 51683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 3819 - 3783
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  3819 tactccctccgtccctaattataagacccttttgaga 3783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 12065 - 12101
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  12065 tactccctccgtccctaattataagacccttttgaga 12101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 47640 - 47676
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  47640 tactccctccgtccctaattataagacccttttgaga 47676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 246462 - 246490
Alignment:
Q  173 ctccgttcctaattataagacccttttga 201  Q
    |||||||||||||||||||||||||||||    
T  246462 ctccgttcctaattataagacccttttga 246490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 259159 - 259123
Alignment:
Q  167 tactctctccgttcctaattataagacccttttgaga 203  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  259159 tactccctccgtccctaattataagacccttttgaga 259123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University