View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_10 (Length: 449)
Name: NF18549_low_10
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 17109563 - 17109977
Alignment:
| Q |
19 |
tctgcaccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgt |
118 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109563 |
tctgcacccaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgt |
17109662 |
T |
|
| Q |
119 |
ctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaaccttctcatcaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109663 |
ctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaaccttctcatcaa |
17109762 |
T |
|
| Q |
219 |
ctccctgaaatgggcgtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtcttttcccaatcaagggttgattccactc |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109763 |
ctccctgaaatgggcgtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtcttttcccaatcaagggttgattccactc |
17109862 |
T |
|
| Q |
319 |
tctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaaaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109863 |
tctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaaaa |
17109962 |
T |
|
| Q |
419 |
actgtcccaacataa |
433 |
Q |
| |
|
||||||||||||||| |
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| T |
17109963 |
actgtcccaacataa |
17109977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 23 - 431
Target Start/End: Original strand, 16978235 - 16978643
Alignment:
| Q |
23 |
caccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctat |
122 |
Q |
| |
|
|||||||||| || || ||| || |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||| |
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| T |
16978235 |
caccaaggctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctat |
16978334 |
T |
|
| Q |
123 |
aaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaaccttctcatcaactcc |
222 |
Q |
| |
|
| ||||||||||||| |||| ||| ||||||| | |||||||||| ||||| ||| || |||| |||| | ||||| || || ||||| |||||||| |
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| T |
16978335 |
agatgattgtccacagttggagtcgttctccgatggaggtttgccatcaagcctaagaaacctctttcttgtgaaatgctcaaaacttcttatcaactcg |
16978434 |
T |
|
| Q |
223 |
ctgaaatgggcgtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtcttttcccaatcaagggttgattccactctctc |
322 |
Q |
| |
|
||||||||||| || || | ||||||||||||| | |||||||||| |||||| ||||||||||| |||||| |||||||||||| |||| |||||| |
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| T |
16978435 |
ctgaaatgggctttgccgaccaatacatctctctctaacatgtatattcaagaattagatgtggagttttttcctaatcaagggttgcttcctatctctc |
16978534 |
T |
|
| Q |
323 |
ttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactg |
422 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||||||||||||||||||||||||| || |||| ||||||||| | |||| | ||| || || || |
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| T |
16978535 |
ttacttatctaaatatttgtggttgtcgaaatctcaaacaacttgactacaagggtcttgagaaccttccctctcttagaacattgagtctaaataattg |
16978634 |
T |
|
| Q |
423 |
tcccaacat |
431 |
Q |
| |
|
||||||||| |
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|
| T |
16978635 |
tcccaacat |
16978643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 23 - 431
Target Start/End: Original strand, 17030107 - 17030515
Alignment:
| Q |
23 |
caccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctat |
122 |
Q |
| |
|
|||||||||| || || ||| || |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||| |
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|
| T |
17030107 |
caccaaggctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctat |
17030206 |
T |
|
| Q |
123 |
aaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaaccttctcatcaactcc |
222 |
Q |
| |
|
| || |||||||||| |||| ||| ||||||| | |||||||||| ||||| ||| || |||| |||| | ||||| || || ||||| |||||||| |
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|
| T |
17030207 |
agataattgtccacagttggagtcgttctccgatggaggtttgccatcaagcctaagaaacctctttcttgtgaaatgctcaaaacttcttatcaactca |
17030306 |
T |
|
| Q |
223 |
ctgaaatgggcgtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtcttttcccaatcaagggttgattccactctctc |
322 |
Q |
| |
|
||||||| || || || | |||||||| |||| | ||||||||| |||||| ||||||||||||||||||| |||||||||||| |||| ||||||| |
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| T |
17030307 |
ttgaaatgtgctttgtcaaccaatacatcgctctttaccatgtatattcaagaagcagatgtggagtcttttcctaatcaagggttgcttcccctctctc |
17030406 |
T |
|
| Q |
323 |
ttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactg |
422 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||||||||||||||||||||||||| || |||| ||||||||| | |||| | ||| || || || |
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|
| T |
17030407 |
ttacttatctaaatatccgtggttgtcgaaatctcaaacaacttgactacaagggtcttgagaaccttccctctcttagaacattgagtctaaataattg |
17030506 |
T |
|
| Q |
423 |
tcccaacat |
431 |
Q |
| |
|
||||||||| |
|
|
| T |
17030507 |
tcccaacat |
17030515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 23 - 431
Target Start/End: Original strand, 17048445 - 17048853
Alignment:
| Q |
23 |
caccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctat |
122 |
Q |
| |
|
|||||||||| || || ||| || |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||| |
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|
| T |
17048445 |
caccaaggctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctat |
17048544 |
T |
|
| Q |
123 |
aaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaaccttctcatcaactcc |
222 |
Q |
| |
|
| || |||||||||| |||| ||| ||||||| | |||||||||| ||||| ||| || |||| |||| | ||||| || || ||||| |||||||| |
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|
| T |
17048545 |
agataattgtccacagttggagtcgttctccgatggaggtttgccatcaagcctaagaaacctctttcttgtgaaatgctcaaaacttcttatcaactca |
17048644 |
T |
|
| Q |
223 |
ctgaaatgggcgtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtcttttcccaatcaagggttgattccactctctc |
322 |
Q |
| |
|
||||||| || || || | |||||||| |||| | ||||||||| |||||| ||||||||||||||||||| |||||||||||| |||| ||||||| |
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|
| T |
17048645 |
ttgaaatgtgctttgtcaaccaatacatcgctctttaccatgtatattcaagaagcagatgtggagtcttttcctaatcaagggttgcttcccctctctc |
17048744 |
T |
|
| Q |
323 |
ttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactg |
422 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||||||||||||||||||||||||| || |||| ||||||||| | |||| | ||| || || || |
|
|
| T |
17048745 |
ttacttatctaaatatccgtggttgtcgaaatctcaaacaacttgactacaagggtcttgagaaccttccctctcttagaacattgagtctaaataattg |
17048844 |
T |
|
| Q |
423 |
tcccaacat |
431 |
Q |
| |
|
||||||||| |
|
|
| T |
17048845 |
tcccaacat |
17048853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 17024488 - 17024531
Alignment:
| Q |
64 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
17024488 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17024531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 17035250 - 17035293
Alignment:
| Q |
64 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
17035250 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17035293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 17089760 - 17089803
Alignment:
| Q |
64 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
17089760 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17089803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 326
Target Start/End: Original strand, 14313962 - 14314008
Alignment:
| Q |
280 |
gatgtggagtcttttcccaatcaagggttgattccactctctcttac |
326 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
14313962 |
gatgtggagtcttttcccgatcaagggttgcttccacgctctcttac |
14314008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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