View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18549_low_11 (Length: 441)

Name: NF18549_low_11
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18549_low_11
NF18549_low_11
[»] chr4 (4 HSPs)
chr4 (130-424)||(42998444-42998738)
chr4 (130-389)||(42999072-42999331)
chr4 (130-227)||(50232993-50233090)
chr4 (130-240)||(43605582-43605691)
[»] chr5 (4 HSPs)
chr5 (131-351)||(21654547-21654767)
chr5 (130-266)||(29632558-29632694)
chr5 (131-227)||(21012013-21012109)
chr5 (199-240)||(10641659-10641700)
[»] chr2 (6 HSPs)
chr2 (13-132)||(45414722-45414841)
chr2 (131-267)||(13067119-13067255)
chr2 (132-232)||(15930901-15931001)
chr2 (130-227)||(40915477-40915574)
chr2 (130-183)||(4814602-4814654)
chr2 (130-183)||(9059899-9059951)
[»] chr8 (1 HSPs)
chr8 (133-240)||(5242660-5242766)
[»] chr1 (3 HSPs)
chr1 (133-267)||(48538558-48538692)
chr1 (132-240)||(39179965-39180073)
chr1 (130-227)||(24535404-24535501)
[»] scaffold0421 (1 HSPs)
scaffold0421 (131-232)||(4569-4670)
[»] chr7 (3 HSPs)
chr7 (130-240)||(18478629-18478739)
chr7 (130-220)||(18418404-18418494)
chr7 (130-184)||(23485479-23485532)
[»] chr6 (4 HSPs)
chr6 (129-240)||(7015463-7015574)
chr6 (134-240)||(5169674-5169780)
chr6 (132-160)||(907778-907806)
chr6 (135-183)||(8609491-8609539)
[»] chr3 (11 HSPs)
chr3 (131-227)||(32793231-32793327)
chr3 (131-227)||(50833604-50833700)
chr3 (131-227)||(50842153-50842249)
chr3 (130-183)||(50833759-50833812)
chr3 (130-183)||(50833824-50833877)
chr3 (130-183)||(50841976-50842029)
chr3 (130-183)||(50842041-50842094)
chr3 (136-248)||(16980972-16981083)
chr3 (131-240)||(40166578-40166686)
chr3 (134-183)||(50717211-50717259)
chr3 (134-183)||(50795589-50795637)
[»] scaffold0246 (1 HSPs)
scaffold0246 (135-185)||(11383-11433)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 130 - 424
Target Start/End: Complemental strand, 42998738 - 42998444
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  42998738 tatcccttactccttaatgttattaggtctgcaaacacttaaccctaaaaatttccctctaaatcttatgcattaattgttgttagtgttaaccctaaaa 42998639  T
Q  230 aattccctctatattccaccagatgaatttgaaaaatcttgatgtcagcaatcagaacattatataacgtgctattttgttaaattttttatataatgaa 329  Q
    | ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||    
T  42998638 acttccctccatattccaccacatgaatttgaaaaatcttgatgtcagcaatcagaacattatataacgtgccattttgttaaatttttgatacaatgaa 42998539  T
Q  330 tcgcattaaatttcaactcttgatatgccgcatggaaaacagaaagctctccactcagaannnnnnngggtttcccacacatgtgcaatggtttt 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        || ||||||||||||||||||||||||    
T  42998538 tcgcattaaatttcaactcttgatatgccgcatggaaaacagaaagctctccactcagaatttttttcggcttcccacacatgtgcaatggtttt 42998444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 130 - 389
Target Start/End: Complemental strand, 42999331 - 42999072
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||||||||||    
T  42999331 tatcccttactccttaatgttattaggtctgcaaacacttaaccctaaaaatttccctctaaatcttatgcattaattgctgttagtgttaaccctaaaa 42999232  T
Q  230 aattccctctatattccaccagatgaatttgaaaaatcttgatgtcagcaatcagaacattatataacgtgctattttgttaaattttttatataatgaa 329  Q
    | ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||    
T  42999231 acttccctccatattccaccacatgaatttgaaaaatcttgatgtcagcaatcagaacattatataacgtgccattttgttaaatttttgatacaatgaa 42999132  T
Q  330 tcgcattaaatttcaactcttgatatgccgcatggaaaacagaaagctctccactcagaa 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42999131 tcgcattaaatttcaactcttgatatgccgcatggaaaacagaaagctctccactcagaa 42999072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 50233090 - 50232993
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaa 227  Q
    ||||||||||||||||||||||||||||  |||| |||||||| |||||||||||    | ||  |  || |||||||||||||||||||||||||||    
T  50233090 tatcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttctcgctcaaaatgttgtattaattgttgttagtgttaaccctaa 50232993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 130 - 240
Target Start/End: Complemental strand, 43605691 - 43605582
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaaa 229  Q
    |||| ||| ||||||||||||||||||| |||||||| ||||| ||||||||||   || ||||||  ||||||||||| | | |||| || ||||||||    
T  43605691 tatctcttcctccttaatgttattaggtttgcaaacaattaaccctaaaaatttggcttcaaatctgctgcattaattgctctaagtg-tagccctaaaa 43605593  T
Q  230 aattccctcta 240  Q
    | |||||||||    
T  43605592 atttccctcta 43605582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 131 - 351
Target Start/End: Original strand, 21654547 - 21654767
Alignment:
Q  131 atcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaaaa 230  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||| |  ||||| | ||||||| ||||||||||| ||||||||||||||||||||||    
T  21654547 atcccttactccttaatgttattaggtgtgcaaacactaaaccctacatttttccctctaaatctgatgcattaattattgttagtgttaaccctaaaaa 21654646  T
Q  231 attccctctatattccaccagatgaatttgaaaaatcttgatgtcagcaatcagaacattatataacgtgctattttgttaaattttttatataatgaat 330  Q
     ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| |||||||    
T  21654647 cttccctccatattccaccacatgaatttgaaaaatcttgatgtcagcaatcagaacattatataacgtgccattttgttaaatttgtgatacaatgaat 21654746  T
Q  331 cgcattaaatttcaactcttg 351  Q
     ||||||||||||| ||||||    
T  21654747 tgcattaaatttcacctcttg 21654767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 130 - 266
Target Start/End: Complemental strand, 29632694 - 29632558
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaaa 229  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||| |||||||||    
T  29632694 tatcccttactccttaatgttattaggtttgcaaacacttaaccctaaaaatttccctctaaatctaatgcattaattgttgttagtgttgaccctaaaa 29632595  T
Q  230 aattccctctatattccaccagatgaatttgaaaaat 266  Q
    |||| |||||| |||| || |  ||||||| ||||||    
T  29632594 aatttcctctaaattctactatttgaatttcaaaaat 29632558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 21012109 - 21012013
Alignment:
Q  131 atcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaa 227  Q
    |||||||||||||||||||||||||||  |||| |||||||| |||||||||||| | | ||  |  || |||||||||||||||||||||||||||    
T  21012109 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttccctctcaaaatgttgtattaattgttgttagtgttaaccctaa 21012013  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 10641700 - 10641659
Alignment:
Q  199 gcattaattgttgttagtgttaaccctaaaaaattccctcta 240  Q
    ||||||| ||||||||||| |||||||| |||||||||||||    
T  10641700 gcattaaatgttgttagtgataaccctagaaaattccctcta 10641659  T

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Target: chr2 (Bit Score: 116; Significance: 7e-59; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 45414722 - 45414841
Alignment:
Q  13 aaaatccagcttagattcttgattactatgtattgtggtccttcctcttttaactcatacaccgcatatattatgtgtcatttggagcagtggtgctttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45414722 aaaatccagcttagattcttgattactatgtattgtggtcctttctcttttaactcatacaccgcatatattatgtgtcatttggagcagtggtgctttc 45414821  T
Q  113 atcgtgacatacgaatgtat 132  Q
    ||||||||||||||||||||    
T  45414822 atcgtgacatacgaatgtat 45414841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 131 - 267
Target Start/End: Complemental strand, 13067255 - 13067119
Alignment:
Q  131 atcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaaaa 230  Q
    |||||||||||||||||||||||||||  |||| |||||||| |||||||||||| | |||| ||  | |||||||||  |||||| |||||||||||||    
T  13067255 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttccctctaaaactggttcattaattgccgttagtattaaccctaaaaa 13067156  T
Q  231 attccctctatattccaccagatgaatttgaaaaatc 267  Q
    ||||  || ||||||||||| |||||||| |||||||    
T  13067155 attctttcaatattccaccaaatgaatttcaaaaatc 13067119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 15931001 - 15930901
Alignment:
Q  132 tcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaaaaa 231  Q
    ||||||| |||||||||||||||||| |||||||| ||||| |||||||||||| | |||| |  |||||||||||||| |||||| |||||||||||||    
T  15931001 tcccttattccttaatgttattaggtttgcaaacatttaaccctaaaaatttccctctaaaaccaatgcattaattgttcttagtgctaaccctaaaaaa 15930902  T
Q  232 t 232  Q
    |    
T  15930901 t 15930901  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 40915574 - 40915477
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaa 227  Q
    ||||||||||||||||||||| ||||||  |||| |||||||| ||||||| |||| | | ||  |  || |||||||||||||||||||||||||||    
T  40915574 tatcccttactccttaatgttgttaggttagcaatcacttaaccctaaaaaattccctctcaaaatgttgtattaattgttgttagtgttaaccctaa 40915477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 4814602 - 4814654
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaattt 183  Q
    |||||||||||||||||| ||||||||| |||||||||||||| ||||| ||||    
T  4814602 tatcccttactccttaattttattaggt-tgcaaacacttaaccctaaagattt 4814654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 9059951 - 9059899
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaattt 183  Q
    |||||||||||||||||| ||||||||| |||||  ||||||| ||||||||||    
T  9059951 tatcccttactccttaatcttattaggt-tgcaacaacttaaccctaaaaattt 9059899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 5242766 - 5242660
Alignment:
Q  133 cccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaaaaat 232  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||| | |||||||  ||||||||||||||||| || || |||||||||||    
T  5242766 cccttactccttaatgttattaggtttgcaaacacttaaccctaaaaatttccctctaaatctattgcattaattgttgttattg-tagccctaaaaaat 5242668  T
Q  233 tccctcta 240  Q
    ||||||||    
T  5242667 tccctcta 5242660  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 48538558 - 48538692
Alignment:
Q  133 cccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaaaaat 232  Q
    |||||||||||||||||||||||||  |||| |||||||| |||||||||||| | |||| ||  | |||||||||  ||||||||||||||||||||||    
T  48538558 cccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttccctctaaaactgtttcattaattgccgttagtgttaaccctaaaaaat 48538657  T
Q  233 tccctctatattccaccagatgaatttgaaaaatc 267  Q
    ||  || ||||||||||| |||||||| |||||||    
T  48538658 tctttcaatattccaccaaatgaatttcaaaaatc 48538692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 39179965 - 39180073
Alignment:
Q  132 tcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaaaaa 231  Q
    |||||||||||||||||||||||||| ||||| |||| ||| |||| ||||||| | |||||||| |||||||| ||||||| ||| |||||||||||||    
T  39179965 tcccttactccttaatgttattaggtttgcaaccactaaaccctaataatttccctctaaatcttttgcattaaatgttgttggtgataaccctaaaaaa 39180064  T
Q  232 ttccctcta 240  Q
    |||||||||    
T  39180065 ttccctcta 39180073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 24535501 - 24535404
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaa 227  Q
    ||||||||||||||||||||||||||||  |||| |||||||| | |||||||||| | | ||  |  || |||||||||||||||||||||||||||    
T  24535501 tatcccttactccttaatgttattaggttagcaatcacttaacccaaaaaatttccctctcaaaatgttgtattaattgttgttagtgttaaccctaa 24535404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 131 - 232
Target Start/End: Original strand, 4569 - 4670
Alignment:
Q  131 atcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaaaa 230  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | |||| |  |||||||||||||| |||||| ||||||||||||    
T  4569 atcccttattccttaatgttattaggtttgcaaacacttaactctaaaaatttccctctaaaaccaatgcattaattgttcttagtgctaaccctaaaaa 4668  T
Q  231 at 232  Q
    ||    
T  4669 at 4670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 18478629 - 18478739
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaaa 229  Q
    |||||||||||||||||||||||||||| |||||  ||| ||| |||| ||||||| | |||||||  |||||||| ||||||| ||| |||||||| ||    
T  18478629 tatcccttactccttaatgttattaggtttgcaactactaaaccctaataatttccctctaaatctattgcattaaatgttgttggtgataaccctagaa 18478728  T
Q  230 aattccctcta 240  Q
    |||||||||||    
T  18478729 aattccctcta 18478739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 18418494 - 18418404
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgtta 220  Q
    ||||||||||||||||||||| ||||||  |||| |||||||| |||||||||||| | | ||  |  || ||||||||||||||||||||    
T  18418494 tatcccttactccttaatgttgttaggttagcaatcacttaaccctaaaaatttccctctcaaaatgttgtattaattgttgttagtgtta 18418404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 23485479 - 23485532
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttc 184  Q
    |||||||||||||||||| ||||||||| |||||||||||||| |||||||||||    
T  23485479 tatcccttactccttaattttattaggt-tgcaaacacttaaccctaaaaatttc 23485532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 240
Target Start/End: Original strand, 7015463 - 7015574
Alignment:
Q  129 gtatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaa 228  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||| ||||  |||||| | |||||||  || ||||| ||||||||||| ||| ||||||    
T  7015463 gtatcccttactccttaatgttattaggtttgcaaccactaaaccctaattatttccctctaaatctattgtattaaatgttgttagtgataatcctaaa 7015562  T
Q  229 aaattccctcta 240  Q
    ||||| ||||||    
T  7015563 aaatttcctcta 7015574  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 5169674 - 5169780
Alignment:
Q  134 ccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaaaaatt 233  Q
    |||||||||||||| ||||||||| ||||| |||| ||| |||| ||||||| | |||||||  ||||||||  ||||| |||| |||||||| ||||||    
T  5169674 ccttactccttaatattattaggtttgcaaccactaaaccctaataatttccctctaaatctattgcattaaacgttgtcagtgataaccctagaaaatt 5169773  T
Q  234 ccctcta 240  Q
     ||||||    
T  5169774 tcctcta 5169780  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 907806 - 907778
Alignment:
Q  132 tcccttactccttaatgttattaggtctg 160  Q
    |||||||||||||||||||||||||||||    
T  907806 tcccttactccttaatgttattaggtctg 907778  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 8609539 - 8609491
Alignment:
Q  135 cttactccttaatgttattaggtctgcaaacacttaactctaaaaattt 183  Q
    ||||||||||||| |||||||||||||| ||| ||||| ||| ||||||    
T  8609539 cttactccttaatcttattaggtctgcatacaattaaccctagaaattt 8609491  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 32793327 - 32793231
Alignment:
Q  131 atcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaa 227  Q
    |||||||||||||||||||||||||||  |||| |||||||| |||||||||||| | | ||  |  || |||||||||||||||||||||||||||    
T  32793327 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttccctctcaaaatgttgtattaattgttgttagtgttaaccctaa 32793231  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 50833700 - 50833604
Alignment:
Q  131 atcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaa 227  Q
    |||||||||||||||||||||||||||  |||| |||||||| |||||||||||  | | ||  |  || |||||||||||||||||||||||||||    
T  50833700 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttctctctcaaaatgttgtattaattgttgttagtgttaaccctaa 50833604  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 227
Target Start/End: Original strand, 50842153 - 50842249
Alignment:
Q  131 atcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaa 227  Q
    |||||||||||||||||||||||||||  |||| |||||||| |||||||||||  | | ||  |  || |||||||||||||||||||||||||||    
T  50842153 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttctctctcaaaatgttgtattaattgttgttagtgttaaccctaa 50842249  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 50833759 - 50833812
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaattt 183  Q
    |||||||||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  50833759 tatcccttactctttaatgttattaggtttgcaaacacttaaccctaaaaattt 50833812  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 50833824 - 50833877
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaattt 183  Q
    |||||||||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  50833824 tatcccttactcgttaatgttattaggtttgcaaacacttaaccctaaaaattt 50833877  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 50842029 - 50841976
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaattt 183  Q
    |||||||||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  50842029 tatcccttactcgttaatgttattaggtttgcaaacacttaaccctaaaaattt 50841976  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 50842094 - 50842041
Alignment:
Q  130 tatcccttactccttaatgttattaggtctgcaaacacttaactctaaaaattt 183  Q
    |||||||||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  50842094 tatcccttactctttaatgttattaggtttgcaaacacttaaccctaaaaattt 50842041  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 248
Target Start/End: Original strand, 16980972 - 16981083
Alignment:
Q  136 ttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaaaaattcc 235  Q
    |||||||||||||||||||||| |||||   |||||| ||||||| ||   | ||||||| ||||||||| |  |||||||||||||||| ||||||||     
T  16980972 ttactccttaatgttattaggtttgcaattgcttaaccctaaaaaattttctctaaatctcatgcattaacttctgttagtgttaaccct-aaaaattct 16981070  T
Q  236 ctctatattccac 248  Q
    |||| ||||||||    
T  16981071 ctctctattccac 16981083  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 40166686 - 40166578
Alignment:
Q  131 atcccttactccttaatgttattaggtctgcaaacacttaactctaaaaatttccttttaaatcttatgcattaattgttgttagtgttaaccctaaaaa 230  Q
    |||||||||||||||||||||||| ||||||||| | | ||| ||| ||||||   |  ||||||  ||||||||||||||| | || || |||||||||    
T  40166686 atcccttactccttaatgttattaagtctgcaaataatcaaccctagaaatttggctccaaatctgctgcattaattgttgtaattg-tagccctaaaaa 40166588  T
Q  231 attccctcta 240  Q
     |||||||||    
T  40166587 tttccctcta 40166578  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 50717211 - 50717259
Alignment:
Q  134 ccttactccttaatgttattaggtctgcaaacacttaactctaaaaattt 183  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  50717211 ccttactccttaattttattaggt-tgcaaacacttaactctaaagattt 50717259  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 50795637 - 50795589
Alignment:
Q  134 ccttactccttaatgttattaggtctgcaaacacttaactctaaaaattt 183  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  50795637 ccttactccttaattttattaggt-tgcaaacacttaactctaaagattt 50795589  T

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Target: scaffold0246 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 11383 - 11433
Alignment:
Q  135 cttactccttaatgttattaggtctgcaaacacttaactctaaaaatttcc 185  Q
    ||||||||||||||||||||||| | ||||||||||||  |||||||||||    
T  11383 cttactccttaatgttattaggttttcaaacacttaaccttaaaaatttcc 11433  T

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