View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18549_low_13 (Length: 429)

Name: NF18549_low_13
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18549_low_13
NF18549_low_13
[»] chr7 (6 HSPs)
chr7 (1-413)||(4803541-4803953)
chr7 (58-138)||(37465274-37465354)
chr7 (58-138)||(6776848-6776928)
chr7 (60-138)||(37582510-37582588)
chr7 (60-138)||(37588805-37588883)
chr7 (61-114)||(49022130-49022183)
[»] chr1 (2 HSPs)
chr1 (4-92)||(23832786-23832874)
chr1 (149-216)||(30534049-30534116)
[»] chr3 (2 HSPs)
chr3 (1-57)||(37505271-37505327)
chr3 (61-114)||(37426059-37426112)
[»] chr8 (1 HSPs)
chr8 (141-246)||(29893902-29894007)
[»] chr2 (1 HSPs)
chr2 (141-240)||(38571246-38571346)
[»] chr4 (1 HSPs)
chr4 (149-206)||(44857139-44857196)


Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 4803541 - 4803953
Alignment:
Q  1 acctcattttgatccattggccaattactactaaaccagatgaagttaaataacctacaggaagcatagcaacattagtgaactggtttggtgcatgatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4803541 acctcattttgatccattggccaattactactaaaccagatgaagttaaataacctacaggaagcatagcaacattagtgaactggtttggtgcatgata 4803640  T
Q  101 atgctcctacactttcaactttctcatgagttggagctagaaaaaatcttttaatgatcctagttcttaacagaacttgcaaaagctaaaaaatcataag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803641 atgctcctacactttcaactttctcatgagttggagctagaaaaaatcttttaatgatcctagttcttaacagaacttgcaaaagctaaaaaatcataag 4803740  T
Q  201 caaattacagagctatgcggacataattacacaatttatattcacatagctatataatctatgcaacttttacctgtagaattacaaccagagtctatag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803741 caaattacagagctatgcggacataattacacaatttatattcacatagctatataatctatgcaacttttacctgtagaattacaaccagagtctatag 4803840  T
Q  301 cttaatnnnnnnnnttgtttttgaaagaacaacatttaaaaagttaacatctgatattcctgtagcatattcacatagctatatagtttataatcacaca 400  Q
    ||||||        ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4803841 cttaataaaaaaaattgtttttgaaagaacagcatttaaaaagttaacatctgatattcctatagcatattcacatagctatatagtttataatcacaca 4803940  T
Q  401 gtttatagcatgt 413  Q
    |||||||||||||    
T  4803941 gtttatagcatgt 4803953  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 37465274 - 37465354
Alignment:
Q  58 caggaagcatagcaacattagtgaactggtttggtgcatgattatgctcctacactttcaactttctcatgagttggagct 138  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  37465274 caggaagcatagcaacattagtgaactggtttggtgcatggttatgctcctatactttcaactttctcatgagttggagct 37465354  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 6776928 - 6776848
Alignment:
Q  58 caggaagcatagcaacattagtgaactggtttggtgcatgattatgctcctacactttcaactttctcatgagttggagct 138  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  6776928 caggaagcatagcaacaatagtgaactggtttggtgcatggttatgctcctatactttcaactttctcatgagttggagct 6776848  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 37582588 - 37582510
Alignment:
Q  60 ggaagcatagcaacattagtgaactggtttggtgcatgattatgctcctacactttcaactttctcatgagttggagct 138  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||| |||||||||    
T  37582588 ggaagcatagccacattagtgaactggtttggtgcatggctatgctcctatactttcaactttctcatgggttggagct 37582510  T

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Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 37588883 - 37588805
Alignment:
Q  60 ggaagcatagcaacattagtgaactggtttggtgcatgattatgctcctacactttcaactttctcatgagttggagct 138  Q
    ||||| ||||| ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||| |||||||||    
T  37588883 ggaagtatagccacattagtgaactggtttggtgcatggctatgctcctatactttcaactttctcatgggttggagct 37588805  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 49022130 - 49022183
Alignment:
Q  61 gaagcatagcaacattagtgaactggtttggtgcatgattatgctcctacactt 114  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  49022130 gaagcatagcaacattagtgaactggtttggtgcatggttatgttcctatactt 49022183  T

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Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 23832786 - 23832874
Alignment:
Q  4 tcattttgatccattggccaattactactaaaccagatgaagttaaataacctacaggaagcatagcaacattagtgaactggtttggt 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23832786 tcattttgatccattggccaattactactaaaccagatgaagttaaataacctacaggaagcatagcaacattagtgaaccggtttggt 23832874  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 30534116 - 30534049
Alignment:
Q  149 ttttaatgatcctagttcttaacagaacttgcaaaagctaaaaaatcataagcaaattacagagctat 216  Q
    |||||||||||||| | | ||| |||||||||| |||||||| || ||||| |||||| |||||||||    
T  30534116 ttttaatgatcctaatacctaatagaacttgcacaagctaaataaacataatcaaattgcagagctat 30534049  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 37505327 - 37505271
Alignment:
Q  1 acctcattttgatccattggccaattactactaaaccagatgaagttaaataaccta 57  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  37505327 acctcattttgatccattggccaattactactaaaccaggtgaagttaaatacccta 37505271  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 37426112 - 37426059
Alignment:
Q  61 gaagcatagcaacattagtgaactggtttggtgcatgattatgctcctacactt 114  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  37426112 gaagcatagcaacattagtgaactggtttggtgcatggttatgttcctatactt 37426059  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 29893902 - 29894007
Alignment:
Q  141 aaaaaatcttttaatgatcctagttcttaacagaacttgcaaaagctaaaaaatcataagcaaattacagagctatgcggacataattacacaatttata 240  Q
    |||||||||||||||||||||| ||  |||| ||||||||| ||| ||||||| ||| | || ||| || ||||||  | ||||||||||||| ||||||    
T  29893902 aaaaaatcttttaatgatcctaattactaaccgaacttgcacaagttaaaaaaacatgatcagattgcatagctatatgcacataattacacagtttata 29894001  T
Q  241 ttcaca 246  Q
     |||||    
T  29894002 atcaca 29894007  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 38571346 - 38571246
Alignment:
Q  141 aaaaaatcttttaatgatcctagttcttaacagaacttgcaaaagctaa-aaaatcataagcaaattacagagctatgcggacataattacacaatttat 239  Q
    |||||||||||||||||||||| ||  |||| ||||||||| ||||||| |||| ||||| |||||| || || |||  | ||||||||||||| |||||    
T  38571346 aaaaaatcttttaatgatcctaattactaaccgaacttgcacaagctaaaaaaaacataatcaaattgcatagttatatgcacataattacacagtttat 38571247  T
Q  240 a 240  Q
    |    
T  38571246 a 38571246  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 44857139 - 44857196
Alignment:
Q  149 ttttaatgatcctagttcttaacagaacttgcaaaagctaaaaaatcataagcaaatt 206  Q
    |||||||||||||| ||| |||| ||||||||| |||||||| || ||||| ||||||    
T  44857139 ttttaatgatcctaattcctaaccgaacttgcacaagctaaataaacataatcaaatt 44857196  T

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