View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_14 (Length: 417)
Name: NF18549_low_14
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 32857317 - 32856990
Alignment:
| Q |
17 |
agtatatgcagtagcacattagaagttgaccaacgcgtttcacaaaaattaaactc------acattagtttttagaaacattaatatatttccttnnnn |
110 |
Q |
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| T |
32857317 |
agtatatgcagcagcacattagaagttgaccaacgcgtttcacaaaaattaaactttattttacattagtttttagaaacattaatatatttccttaaaa |
32857218 |
T |
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| Q |
111 |
nnnnnncatttaatatatttgacccaataatgtgattactctacgataataggacaaaactaatcttccaaccgacatcacgagtgcaaacttaactatc |
210 |
Q |
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| T |
32857217 |
aaaaaacatttaatatatttgacccaataatgtgattactctacgataataggacaaaactaatcttccaaccgacatcacgagtgcaaacttaactatc |
32857118 |
T |
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| Q |
211 |
aaaactttttggccagtttaatacctgctagtggattgacttggattgtcacaattcaatgccatatttgaccctataaaggaagcataaataaataatt |
310 |
Q |
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| T |
32857117 |
ataactttttggccagtttaatacctgctagtggattgacttggattgtcactattcaatgccatatttgaccctataaaggaagcataaataaataatt |
32857018 |
T |
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| Q |
311 |
cagatatgaataaaatagactatattta |
338 |
Q |
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| T |
32857017 |
cagatatgaataaaatagactatattta |
32856990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 32856851 - 32856770
Alignment:
| Q |
322 |
aaaatagactatatttaatctaaagttcaatcagcaaaaaatacatccaaagtttgattgaactcaccgaagctgcaatgat |
403 |
Q |
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| T |
32856851 |
aaaacagactatatttaatctaaagttcaatcaacaaaaaatacacccaaagtttgattgaactcaccgaagctgcaatgat |
32856770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 32859195 - 32859100
Alignment:
| Q |
198 |
aaacttaactatcaaaactttttggccagtttaatacctgctagtggattgact----tggattgtcacaattcaatgccatatttgaccctataaag |
291 |
Q |
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| T |
32859195 |
aaacttaactatcaaaa--ttttagccaataaaatacctgctagtggattgattgacctggatcatcacaattcaatgccatatttgaccctataaag |
32859100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 389
Target Start/End: Complemental strand, 32859037 - 32858961
Alignment:
| Q |
314 |
atatgaataaaatagactatatttaatctaaagttcaatcagca-aaaaatacatccaaagtttgattgaactcacc |
389 |
Q |
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| T |
32859037 |
atatgaataaaatagaattaatttaatctaaagttcattcaccaggaaaaaacatctaaagtttgattgagctcacc |
32858961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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