View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_16 (Length: 397)
Name: NF18549_low_16
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 3719096 - 3718729
Alignment:
| Q |
14 |
atataaactaatttggtggttttgttgtgctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaa |
113 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3719096 |
atataaactaatttggtggttttgttgagctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaa |
3718997 |
T |
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| Q |
114 |
gagacgagtttttgcaatgttgaagaaaaagcttataaggaacgcaagaacgatcatgaaaaaattcgggaggaagatcttggccacgaataggtagaca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3718996 |
gagacgagtttttgcaatgttgaagaaaaagcttataaggaacgcaagaacgatcatgaaaaaattcgggaggaagatcttggcctcgaataggtagaca |
3718897 |
T |
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| Q |
214 |
acctggaatctgaataggatcaatgtgatctttgtattcacatgaaacttgttcatgcagtgtcggaaaatacaagttgaatgaagttatcatggcagaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3718896 |
acctggaatctgaataggatcaatgtgatctttgtattcacatgaaacttgttcatgcagtgtcggaaaatacaagttgaatgaagttatcatggcagaa |
3718797 |
T |
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| Q |
314 |
agtgggaagtatataaaagataagaggttcaagtctttagctatttctaatgcttgacttgcaaaagg |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3718796 |
agtgggaagtatataaaagataagaggttcaagtctttagctatttctaatgcttgacttgcaaaagg |
3718729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 3707587 - 3707220
Alignment:
| Q |
14 |
atataaactaatttggtggttttgttgtgctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3707587 |
atataaactaatttggtggttttgttgtgctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcgccaagaaaccatgagcaa |
3707488 |
T |
|
| Q |
114 |
gagacgagtttttgcaatgttgaagaaaaagcttataaggaacgcaagaacgatcatgaaaaaattcgggaggaagatcttggccacgaataggtagaca |
213 |
Q |
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||||| |||| ||| ||||| ||||||||| | |||| ||| | ||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
3707487 |
gagacaagttcttggaatgtagaagaaaaatactgtaagcaacactagatcgatcatgaaaaaattcgggaggaagatctttgccgagaataggtagaca |
3707388 |
T |
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| Q |
214 |
acctggaatctgaataggatcaatgtgatctttgtattcacatgaaacttgttcatgcagtgtcggaaaatacaagttgaatgaagttatcatggcagaa |
313 |
Q |
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|| |||||||||||| | ||| |||||||||||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||| |
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| T |
3707387 |
tcccggaatctgaataaggtcagtgtgatctttgtattcacatgaaacttgtttatgcagtgtcggacaatagaagtgtaatgaagttatcatggcagaa |
3707288 |
T |
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| Q |
314 |
agtgggaagtatataaaagataagaggttcaagtctttagctatttctaatgcttgacttgcaaaagg |
381 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3707287 |
agtgggaaatatacaaaagataagaggttcaagtctttagctatttctaatgcttgacttgcaaaagg |
3707220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 3770608 - 3770975
Alignment:
| Q |
14 |
atataaactaatttggtggttttgttgtgctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3770608 |
atataaactaatttggtggttttgttgtgctcctcctgcaaggctctccctgtactagcctccatttttgagaaactattcaccaagaaaccatgagcaa |
3770707 |
T |
|
| Q |
114 |
gagacgagtttttgcaatgttgaagaaaaagcttataaggaacgcaagaacgatcatgaaaaaattcgggaggaagatcttggccacgaataggtagaca |
213 |
Q |
| |
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||||| |||| ||| ||||| ||||||||| | ||| |||| | ||| |||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
3770708 |
gagacaagttcttggaatgtagaagaaaaaaactgtaacgaacactagatcgatcatgaaaaaattcgggaggaagatcttggctacaaataggtagaca |
3770807 |
T |
|
| Q |
214 |
acctggaatctgaataggatcaatgtgatctttgtattcacatgaaacttgttcatgcagtgtcggaaaatacaagttgaatgaagttatcatggcagaa |
313 |
Q |
| |
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||| |||| ||||||| | ||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
3770808 |
acccggaaactgaataaggtcagtatgatctttgtattcacatgaaacttgttcatgcagtgccggaaaatacaagttgaatgaagttgtcatggcagaa |
3770907 |
T |
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| Q |
314 |
agtgggaagtatataaaagataagaggttcaagtctttagctatttctaatgcttgacttgcaaaagg |
381 |
Q |
| |
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||||| ||||||| ||||||||||| |||| ||||||| |||||||||||||||||||||||| |||| |
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| T |
3770908 |
agtggaaagtatacaaaagataagatgttctagtcttttgctatttctaatgcttgacttgcataagg |
3770975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 3778275 - 3778636
Alignment:
| Q |
20 |
actaatttggtggttttgttgtgctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagacg |
119 |
Q |
| |
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||||||| |||| | ||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3778275 |
actaattgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaa |
3778374 |
T |
|
| Q |
120 |
agtttttgcaatgttgaagaaaaagcttataaggaacgcaagaacgatcatgaaaaaattcgggaggaagatcttggccacgaataggtagacaacctgg |
219 |
Q |
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|||| ||| ||||| ||||||||| |||| | | ||| ||||||||||||||||| ||||| |||||||||||| ||||||| | |||||| || |
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| T |
3778375 |
agttcttggaatgtagaagaaaaaaaccgtaagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccgg |
3778474 |
T |
|
| Q |
220 |
aatctgaataggatcaatgtgatctttgtattcacatgaaacttgttcatgcagtgtcggaaaatacaagttgaatgaagttatcatggcagaaagtggg |
319 |
Q |
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|||||||||||| || |||||||||||||||||| ||||||||||||||| |||||||| |||| ||| || ||||||| |||||||||||||||| |
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| T |
3778475 |
aatctgaatagggtcggtgtgatctttgtattcacctgaaacttgttcatgaagtgtcggtaaatgcaaaaagagtgaagttcccatggcagaaagtggg |
3778574 |
T |
|
| Q |
320 |
aagtatataaaagataagaggttcaagtctttagctatttctaatgcttgacttgcaaaagg |
381 |
Q |
| |
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||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||| |
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| T |
3778575 |
aagtatacgaaagataagaggtttaagtcttttgctatttctaatgcatgacttgcaaaagg |
3778636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 183 - 381
Target Start/End: Original strand, 33005668 - 33005866
Alignment:
| Q |
183 |
gaggaagatcttggccacgaataggtagacaacctggaatctgaataggatcaatgtgatctttgtattcacatgaaacttgttcatgcagtgtcggaaa |
282 |
Q |
| |
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|||| ||||||||||| ||||||||| ||||| ||||| | |||||| |||| |||||| |||| |||| ||||||||||| | ||| | || || |
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| T |
33005668 |
gagggagatcttggccgcgaataggtgtgcaacccggaatttcaataggttcaacgtgatccatgtactcacccgaaacttgttcgtcaagtattggcaa |
33005767 |
T |
|
| Q |
283 |
atacaagttgaatgaagttatcatggcagaaagtgggaagtatataaaagataagaggttcaagtctttagctatttctaatgcttgacttgcaaaagg |
381 |
Q |
| |
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|| ||||| | ||||||| |||||||||||| |||||||| || |||||||||| ||| || ||||| ||||||||||||||||| |||||||||| |
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| T |
33005768 |
atgcaagtgtagtgaagttgtcatggcagaaacagggaagtacatgaaagataagatgttgaactctttcgctatttctaatgcttggtttgcaaaagg |
33005866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 223 - 369
Target Start/End: Complemental strand, 3700700 - 3700554
Alignment:
| Q |
223 |
ctgaataggatcaatgtgatctttgtattcacatgaaacttgttcatgcagtgtcggaaaatacaagttgaatgaagttatcatggcagaaagtgggaag |
322 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||| || ||| |||||||| || |||| | || || || ||||||||||||||| ||| |
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| T |
3700700 |
ctgaataggctcaatgtgatctttgtattcacacgaaaatttttcgtgcagtgttggcaaatgtgacaacaaagacattgccatggcagaaagtggaaag |
3700601 |
T |
|
| Q |
323 |
tatataaaagataagaggttcaagtctttagctatttctaatgcttg |
369 |
Q |
| |
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||||| |||||||||||||| || ||||| ||||||||||||||||| |
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| T |
3700600 |
tatatgaaagataagaggttgaactcttttgctatttctaatgcttg |
3700554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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