View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_18 (Length: 376)
Name: NF18549_low_18
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 43123173 - 43123535
Alignment:
| Q |
1 |
acccacttcacatagcattatgtacagtcattttgataccatagtcttttaattttatgactacacgttcattttgatacttttgacaataatnnnnnnn |
100 |
Q |
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| T |
43123173 |
acccacttcacatagcattatgtacagtcattttgatacca--gtcttttaattttatgactacacgttcattttgatacttttgacaataataaaaaaa |
43123270 |
T |
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| Q |
101 |
nn-cattcattttacctaataaaaaattgcataatttttcttgactnnnnnnnnnnnnnnnnnnttgcatcatgtgttgtaccaattttttcttgcatta |
199 |
Q |
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| T |
43123271 |
aaacgttcattttacctaataaaaa-ttgcataatttttcttgactaaaaaaagaagaaaaaaattgcatcatgtgttgtaccaattttttcttgcatta |
43123369 |
T |
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| Q |
200 |
tgtgaatttcatcataatctgttcactcttaccaccaccttccataattttgggctctactttccgttggtgtccggctttgagtttgnnnnnnnnnnng |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43123370 |
tgtgaatttcatcataatctgttcactcttaccaccaccttccataattttgggctctactttccgttggtgtccggctttgagtttg-aaaaaaaaaag |
43123468 |
T |
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| Q |
300 |
tatcttattttcaatctcacacttattctcaatttcnnnnnnnactttcatctcattgtattctctg |
366 |
Q |
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| T |
43123469 |
tatcttattttcaatctcacacttattctcaatttttttttttactttcatctcattgtattctctg |
43123535 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 26513223 - 26513267
Alignment:
| Q |
193 |
tgcattatgtgaatttcatcataatctgttcactcttaccaccac |
237 |
Q |
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| T |
26513223 |
tgcattatgtgaatttcatcataatttgttcactcttaccaccac |
26513267 |
T |
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