View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_21 (Length: 340)
Name: NF18549_low_21
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 27134264 - 27134570
Alignment:
| Q |
13 |
aaaataggtataggtattactttatttaataggagcttatagtgttactataattcattggaggtaatgaataagtttggaatctctttatgcaaattaa |
112 |
Q |
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| T |
27134264 |
aaaataggtataggtattactttatttaataggagcttatagtgttactataattcattggaggtaatgaataagtttggaatctctttatgcaaattaa |
27134363 |
T |
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| Q |
113 |
aagcaatattctactaagaaaaaattatcacaatgttagaatgaaaaatttctgaagtatatatggatttttaacgcaatagaaaaggtctttcgtcaaa |
212 |
Q |
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| T |
27134364 |
aagcaatattctactaagaaaaaattatcacaatgttagaatgaaaaatttctgaagtatatatggatttttaacgcaatagaaaaggtctttcgtcaaa |
27134463 |
T |
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| Q |
213 |
agagtccagaaccctttctctcttactaatggaa-ttgattttacactactcaatccacatcatttaagtgttaaaactataaagctagttaagcaaaga |
311 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27134464 |
agagtccagaaccctttctctctcactaatggaatttgattttacactactcaatccacatcatttaagggttaaaactataaagctagttaagcaaaga |
27134563 |
T |
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| Q |
312 |
ttcaaac |
318 |
Q |
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||||||| |
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| T |
27134564 |
ttcaaac |
27134570 |
T |
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