View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_22 (Length: 339)
Name: NF18549_low_22
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 27444405 - 27444098
Alignment:
| Q |
11 |
cacagaaaaaggacaagattaaatgctgatgacgacataaggagcataacctatataatacacccatcaagacaataaattatnnnnnnnttactgcaat |
110 |
Q |
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| T |
27444405 |
cacagaaaaaggacaagattaaatgctgatgacgacataaggagcataacctatataataaacccatcaagacaataaattataaaaaaattactgcaat |
27444306 |
T |
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| Q |
111 |
aataattgaaaatacttgtggtttatattacatgacaaatgtgtctgtatatgtttcatttgtatacatgcacttannnnnnnnnnnngacaaaaattaa |
210 |
Q |
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| T |
27444305 |
aataattgaaaatacttgtggtttatattacatgacaaatgtgtctgtatacg-ttcatttgtatacatgcactta--ttttatttttgacaaaaattaa |
27444209 |
T |
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| Q |
211 |
caaaaattaattaagacggcatattttgtttgctgatggtgttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtg |
310 |
Q |
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|||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27444208 |
caaaaattaattaagacggcatattttgtttggtcatggagttcaagctgatggacagaaggtgatggcatagtcgggtcttgcaaagcaagtgaaagtg |
27444109 |
T |
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| Q |
311 |
ctgctcttatc |
321 |
Q |
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| T |
27444108 |
ctgctcttatc |
27444098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 101 - 321
Target Start/End: Original strand, 27432298 - 27432512
Alignment:
| Q |
101 |
ttactgcaataataattgaaaatacttgtggtttatattacatgacaaatgtgtctgtatatgtttcatttgtatacatgcacttannnnnnnnnnnnga |
200 |
Q |
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| T |
27432298 |
ttactgcaataataattgaaaatacttgtggtttatattacatgacaaatgtgtctgtatacgtttcatttgtatacatgcactta--ttttatttttga |
27432395 |
T |
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| Q |
201 |
caaaaattaacaaaaattaattaagacggcatattttgtttgctgatggtgttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagca |
300 |
Q |
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| T |
27432396 |
caaa----gacataaattaattaagacggcatattttgtttgatcgtgaagtttaatttgatgggcagaaggtgatggcgtaatcgggtcttgcaaagca |
27432491 |
T |
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| Q |
301 |
agtgaaagtgctgctcttatc |
321 |
Q |
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| T |
27432492 |
agtgaaagtgctgctcttatc |
27432512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 27220679 - 27220765
Alignment:
| Q |
235 |
tttgtttgctgatggtgttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtgctgctcttatc |
321 |
Q |
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| T |
27220679 |
tttgtttggtcatggagttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtgctgctcttatc |
27220765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 27214717 - 27214803
Alignment:
| Q |
235 |
tttgtttgctgatggtgttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtgctgctcttatc |
321 |
Q |
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| T |
27214717 |
tttgtttggtcatggagttcaagctgatggacagaaggtgatggcatagtcgggtcttgcaaagcaagtgaaagtgctgctcttatc |
27214803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 251 - 321
Target Start/End: Original strand, 27207362 - 27207432
Alignment:
| Q |
251 |
gttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtgctgctcttatc |
321 |
Q |
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|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27207362 |
gttcaagctgatgggcagaaggtgattgcatagtcgggtcttgcaaagcaagtgaaaatgctgctcttatc |
27207432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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