View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18549_low_23 (Length: 332)

Name: NF18549_low_23
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18549_low_23
NF18549_low_23
[»] chr1 (16 HSPs)
chr1 (1-326)||(46937522-46937848)
chr1 (169-279)||(3950672-3950780)
chr1 (162-293)||(7991503-7991643)
chr1 (218-293)||(7347678-7347753)
chr1 (171-237)||(12764655-12764722)
chr1 (178-245)||(49825890-49825959)
chr1 (168-213)||(52659467-52659512)
chr1 (166-209)||(35426562-35426605)
chr1 (235-278)||(35488282-35488325)
chr1 (214-280)||(6025967-6026033)
chr1 (178-246)||(17473170-17473236)
chr1 (167-199)||(3335232-3335264)
chr1 (167-242)||(7210587-7210660)
chr1 (162-206)||(24808430-24808474)
chr1 (171-199)||(51729607-51729635)
chr1 (229-293)||(52695343-52695407)
[»] chr3 (17 HSPs)
chr3 (162-278)||(2990927-2991043)
chr3 (162-244)||(38884855-38884937)
chr3 (166-293)||(5033316-5033452)
chr3 (167-280)||(51616342-51616455)
chr3 (169-242)||(1237514-1237589)
chr3 (181-277)||(3133473-3133569)
chr3 (168-263)||(48605218-48605313)
chr3 (162-212)||(20901512-20901562)
chr3 (218-279)||(162902-162963)
chr3 (168-246)||(10275769-10275848)
chr3 (178-246)||(32250970-32251034)
chr3 (221-292)||(54084298-54084369)
chr3 (175-214)||(54838655-54838694)
chr3 (166-264)||(21754252-21754350)
chr3 (250-284)||(34357994-34358028)
chr3 (166-216)||(36060339-36060389)
chr3 (168-197)||(36303181-36303210)
[»] chr6 (20 HSPs)
chr6 (166-293)||(4886195-4886322)
chr6 (167-215)||(29166814-29166862)
chr6 (166-221)||(1912446-1912501)
chr6 (170-262)||(27968079-27968171)
chr6 (167-221)||(33532432-33532486)
chr6 (216-293)||(13427709-13427786)
chr6 (168-213)||(30530004-30530049)
chr6 (162-210)||(20808888-20808936)
chr6 (166-213)||(10393994-10394041)
chr6 (162-201)||(29165912-29165951)
chr6 (216-278)||(9163756-9163818)
chr6 (162-280)||(10156619-10156737)
chr6 (232-277)||(770343-770388)
chr6 (168-293)||(19148507-19148632)
chr6 (267-311)||(2730887-2730931)
chr6 (166-206)||(3247408-3247448)
chr6 (169-221)||(7939941-7939993)
chr6 (232-284)||(26494402-26494454)
chr6 (168-220)||(27708106-27708158)
chr6 (168-220)||(27727932-27727984)
[»] chr4 (20 HSPs)
chr4 (168-293)||(30617211-30617344)
chr4 (179-262)||(35522083-35522166)
chr4 (168-292)||(26275479-26275615)
chr4 (178-293)||(33714190-33714303)
chr4 (214-292)||(39305803-39305881)
chr4 (170-280)||(47485998-47486108)
chr4 (217-294)||(415129-415206)
chr4 (168-245)||(8520799-8520876)
chr4 (167-203)||(42647462-42647498)
chr4 (179-245)||(18968308-18968372)
chr4 (162-212)||(1099070-1099120)
chr4 (230-264)||(34581593-34581627)
chr4 (167-196)||(4447985-4448014)
chr4 (180-245)||(13939113-13939178)
chr4 (166-223)||(45554115-45554172)
chr4 (162-294)||(46899905-46900035)
chr4 (232-284)||(13298523-13298575)
chr4 (219-263)||(19984344-19984388)
chr4 (168-208)||(33418349-33418389)
chr4 (171-223)||(51882245-51882297)
[»] chr5 (16 HSPs)
chr5 (166-263)||(17124802-17124899)
chr5 (168-242)||(41970272-41970346)
chr5 (168-311)||(3147090-3147233)
chr5 (166-221)||(4272831-4272886)
chr5 (168-290)||(9634890-9635020)
chr5 (219-291)||(8928401-8928473)
chr5 (166-221)||(6586584-6586639)
chr5 (168-263)||(38346877-38346972)
chr5 (162-284)||(11257722-11257844)
chr5 (232-278)||(41015018-41015064)
chr5 (168-213)||(42440169-42440214)
chr5 (218-293)||(6202574-6202649)
chr5 (167-245)||(41028340-41028419)
chr5 (168-213)||(33534632-33534677)
chr5 (172-213)||(34156730-34156771)
chr5 (171-199)||(5516081-5516109)
[»] chr7 (29 HSPs)
chr7 (168-293)||(30900054-30900188)
chr7 (169-232)||(28726955-28727016)
chr7 (214-291)||(2898879-2898956)
chr7 (169-282)||(42114861-42114974)
chr7 (166-293)||(23117299-23117435)
chr7 (166-220)||(31809136-31809190)
chr7 (162-212)||(32736037-32736087)
chr7 (167-221)||(48517386-48517440)
chr7 (162-199)||(1668351-1668388)
chr7 (169-221)||(3593037-3593089)
chr7 (167-211)||(21173837-21173881)
chr7 (162-206)||(24673360-24673404)
chr7 (218-301)||(9336384-9336467)
chr7 (168-223)||(33710955-33711010)
chr7 (162-192)||(481075-481105)
chr7 (170-212)||(5627515-5627557)
chr7 (256-306)||(6894350-6894400)
chr7 (218-284)||(22686055-22686120)
chr7 (168-218)||(32612403-32612453)
chr7 (178-223)||(28976554-28976599)
chr7 (169-293)||(38622833-38622955)
chr7 (170-245)||(3151587-3151660)
chr7 (172-280)||(5336502-5336610)
chr7 (169-213)||(8558804-8558848)
chr7 (162-206)||(24672799-24672843)
chr7 (167-219)||(28613185-28613237)
chr7 (169-213)||(28892146-28892190)
chr7 (218-294)||(32231746-32231822)
chr7 (167-242)||(34925272-34925345)
[»] chr2 (12 HSPs)
chr2 (168-262)||(17504954-17505048)
chr2 (218-289)||(39597566-39597637)
chr2 (162-291)||(1813467-1813594)
chr2 (234-284)||(16733727-16733777)
chr2 (168-213)||(11521815-11521860)
chr2 (168-213)||(16866671-16866716)
chr2 (164-213)||(38434183-38434232)
chr2 (230-279)||(44460330-44460379)
chr2 (232-284)||(24743013-24743065)
chr2 (232-284)||(29378503-29378555)
chr2 (171-223)||(33390662-33390714)
chr2 (167-195)||(35849490-35849518)
[»] chr8 (11 HSPs)
chr8 (218-293)||(1310115-1310190)
chr8 (177-263)||(9112433-9112519)
chr8 (218-292)||(43935150-43935224)
chr8 (166-221)||(42822651-42822706)
chr8 (167-241)||(42822860-42822932)
chr8 (168-221)||(41686218-41686271)
chr8 (162-222)||(16900879-16900939)
chr8 (168-246)||(18899939-18900017)
chr8 (179-284)||(12138165-12138270)
chr8 (167-215)||(26466090-26466138)
chr8 (194-245)||(33521105-33521154)
[»] scaffold0223 (1 HSPs)
scaffold0223 (168-211)||(10620-10663)
[»] scaffold0085 (1 HSPs)
scaffold0085 (218-293)||(50793-50868)
[»] scaffold0349 (1 HSPs)
scaffold0349 (168-220)||(6511-6563)


Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 46937848 - 46937522
Alignment:
Q  1 cttccaacaaattagcagttgtttaaattccagatgaattatacatctttaatt-agtttctgcgacaactattatgttgaatactaggaaatatgatag 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  46937848 cttccaacaaattagcagttgtttaaattccagatgaattatacatctttaatttagtttctgctacaactattatgttgaatactaggaaatatgatag 46937749  T
Q  100 gtgagaaaaagacttactagtactaatttggtgtatcttagttcattatcactggcagtgttatcacggaaaatagcggtttgttcaaattccgctatgc 199  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46937748 gtgagagaaagacttactagtactaatttggtgtatcttagttcattatcactggcagtgttaccacggaaaatagcggtttgttcaaattccgctatgc 46937649  T
Q  200 aacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagccgttat 299  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46937648 aacagtgttatagcgccactatttcacaatattttgtactaaatagcgcatcgcggaacaatagcactttgttcaaattccgctaagcaatagccgttat 46937549  T
Q  300 ttaacaaaactgaccactggtatttat 326  Q
    |||||||||||||||||||||||||||    
T  46937548 ttaacaaaactgaccactggtatttat 46937522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 279
Target Start/End: Complemental strand, 3950780 - 3950672
Alignment:
Q  169 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactt 268  Q
    |||||||||||||| |||||||||| |||||||| ||  ||||  ||  |||||||||||||||| ||||||||||||| ||| |||||||||||   ||    
T  3950780 aaaatagcggtttgctcaaattccgttatgcaacggtactata--gcagctatttcacattatttggtactaaatagcgtatcgcggaacaatagtgatt 3950683  T
Q  269 tgttcaaattc 279  Q
    |||||||||||    
T  3950682 tgttcaaattc 3950672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 293
Target Start/End: Complemental strand, 7991643 - 7991503
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccact---------atttcacattattttgtactaaatagcgaatca 252  Q
    ||||||| |||||||||||||||  |||||| ||| |||||| || ||||||||||||         |||||||| |||| |||||||||| ||| ||||    
T  7991643 atcacggtaaatagcggtttgttataattccactaagcaacactgctatagcgccactctagctgctatttcacaatattatgtactaaatggcgtatca 7991544  T
Q  253 cggaacaatagcactttgttcaaattccgctaagcaatagc 293  Q
    |||||||||||   |||||||||||| ||| | ||||||||    
T  7991543 cggaacaatagtggtttgttcaaatttcgcaatgcaatagc 7991503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 7347753 - 7347678
Alignment:
Q  218 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagc 293  Q
    |||||||||| ||||||||||||||||| | ||  |  |||||||||| ||||||||||||| |||| ||||||||    
T  7347753 ctatttcacaatattttgtactaaatagtgtattgcaaaacaatagcaatttgttcaaattctgctatgcaatagc 7347678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 12764655 - 12764722
Alignment:
Q  171 aatagcggtttgttcaaattcc-gctatgcaacagtgttatagcgccactatttcacattattttgta 237  Q
    ||||| |||||||||||||||| |||||||| ||||||||||| |||||||||| |||  ||||||||    
T  12764655 aatagtggtttgttcaaattccagctatgcaccagtgttatagtgccactatttgacaacattttgta 12764722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 49825959 - 49825890
Alignment:
Q  178 gtttgttcaaattccgctatgcaacagtg--ttatagcgccactatttcacattattttgtactaaatag 245  Q
    |||||||||||||| ||||||||||||||   |||||| |  |||||||||| |||||||||||||||||    
T  49825959 gtttgttcaaattctgctatgcaacagtgctatatagcactgctatttcacaatattttgtactaaatag 49825890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 52659512 - 52659467
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 213  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||    
T  52659512 gaaaatagcggtttgttcaaattccgtaacgcaacagtgttatagc 52659467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 35426562 - 35426605
Alignment:
Q  166 cggaaaatagcggtttgttcaaattccgctatgcaacagtgtta 209  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||    
T  35426562 cggaaaatagtggtttgctcaaattcctctatgcaacagtgtta 35426605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 35488325 - 35488282
Alignment:
Q  235 gtactaaatagcgaatcacggaacaatagcactttgttcaaatt 278  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||    
T  35488325 gtactaaatagcgtatcccggaacaatagcagtttgttcaaatt 35488282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 6025967 - 6026033
Alignment:
Q  214 gccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattcc 280  Q
    |||||||||| |||  |||||||||||||||||  ||| |||||||||| |  ||||||||||||||    
T  6025967 gccactatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaattcc 6026033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 17473236 - 17473170
Alignment:
Q  178 gtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagc 246  Q
    |||| |||| |||| ||| |||||||||||||||||| |  ||||| ||| ||||||||||||||||||    
T  17473236 gtttcttcatattctgctttgcaacagtgttatagcggc--tatttgacaatattttgtactaaatagc 17473170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 3335264 - 3335232
Alignment:
Q  167 ggaaaatagcggtttgttcaaattccgctatgc 199  Q
    |||||||||||||||||||||||||| ||||||    
T  3335264 ggaaaatagcggtttgttcaaattcctctatgc 3335232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 7210587 - 7210660
Alignment:
Q  167 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaa 242  Q
    ||||||||| |||||| ||||||| | ||| |||||| || |||||   |||||||||||| ||||||||||||||    
T  7210587 ggaaaatagtggtttgctcaaatttcactacgcaacaatgctatagt--cactatttcacaatattttgtactaaa 7210660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 24808474 - 24808430
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtg 206  Q
    ||||||||||| || ||||||||||||||| ||||||| ||||||    
T  24808474 atcacggaaaacagtggtttgttcaaattctgctatgctacagtg 24808430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 51729607 - 51729635
Alignment:
Q  171 aatagcggtttgttcaaattccgctatgc 199  Q
    |||||||||||||||||||||||||||||    
T  51729607 aatagcggtttgttcaaattccgctatgc 51729635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 52695407 - 52695343
Alignment:
Q  229 tattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagc 293  Q
    ||||||||||||||||| | ||||| |||||||||   || | ||||||||||||| ||||||||    
T  52695407 tattttgtactaaatagtgtatcacagaacaatagtgattggctcaaattccgctatgcaatagc 52695343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 2990927 - 2991043
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaat 261  Q
    ||||| |||||||| ||||  |||||||||||||||||||||||| ||||| |||||||||| |||  |||||||||||||||||| |||  |||||||     
T  2990927 atcacagaaaatagaggttcattcaaattccgctatgcaacagtgatatagggccactatttgacaacattttgtactaaatagcgtatcgtggaacaaa 2991026  T
Q  262 agcactttgttcaaatt 278  Q
    || | ||||||||||||    
T  2991027 agaaatttgttcaaatt 2991043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 38884855 - 38884937
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaata 244  Q
    |||||||||||||||||  |||||||||||| ||||||||  ||||||||||  | |||||||||| ||||||||||||||||    
T  38884855 atcacggaaaatagcggcctgttcaaattccactatgcaattgtgttatagcatcgctatttcacaatattttgtactaaata 38884937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 293
Target Start/End: Complemental strand, 5033452 - 5033316
Alignment:
Q  166 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccact---------atttcacattattttgtactaaatagcgaatcacgga 256  Q
    ||||||||||| ||||||||||||||||||| ||||||  | ||||||||||||         |||||||  |||| |||||||||||| | ||||||||    
T  5033452 cggaaaatagcagtttgttcaaattccgctacgcaacacagctatagcgccactataactgcaatttcacgatattatgtactaaatagtgtatcacgga 5033353  T
Q  257 acaatagcactttgttcaaattccgctaagcaatagc 293  Q
    |||||||   |||||||||||| ||||| ||||||||    
T  5033352 acaatagttgtttgttcaaatttcgctatgcaatagc 5033316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 280
Target Start/End: Original strand, 51616342 - 51616455
Alignment:
Q  167 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcac 266  Q
    |||||||| |||| ||||||||||||||||||  ||||||  ||||| || |||||| |||  | | |||| ||||||||| |||  ||||||||| ||     
T  51616342 ggaaaataacggtctgttcaaattccgctatgttacagtgcaatagcaccgctatttgacaacactctgtattaaatagcgtatcgtggaacaataccag 51616441  T
Q  267 tttgttcaaattcc 280  Q
    ||||||||||||||    
T  51616442 tttgttcaaattcc 51616455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 1237589 - 1237514
Alignment:
Q  169 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgc--cactatttcacattattttgtactaaa 242  Q
    |||||||||  |||||||||||| |||| |||||| || ||||||||  |||||||||||| ||||||||||||||    
T  1237589 aaaatagcgccttgttcaaattctgctaagcaacaatgctatagcgcgccactatttcacaatattttgtactaaa 1237514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 277
Target Start/End: Complemental strand, 3133569 - 3133473
Alignment:
Q  181 tgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaat 277  Q
    |||||||||||  | |||| |||||| |||||  || || |||||||| |||||||||||||||| | |||||| |||||||||  |||||||||||    
T  3133569 tgttcaaattctaccatgctacagtgctatagtcccgctgtttcacatcattttgtactaaatagtgtatcacgtaacaatagctatttgttcaaat 3133473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 48605218 - 48605313
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatag 263  Q
    ||||| || ||||||||||||||||||| |||| ||| | ||||||||| ||| |||||  ||||| ||||||||||  | ||||| |||||||||    
T  48605218 gaaaacagaggtttgttcaaattccgctgtgcagcagcgctatagcgccgctacttcaccatatttcgtactaaataatgtatcacagaacaatag 48605313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 20901562 - 20901512
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatag 212  Q
    |||| ||||||||||||||||| |||||| ||||||||||||||| |||||    
T  20901562 atcatggaaaatagcggtttgtacaaatttcgctatgcaacagtgctatag 20901512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 162963 - 162902
Alignment:
Q  218 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattc 279  Q
    |||||||||| ||||||||||||||||||| ||| | ||| |||| || |||||||||||||    
T  162963 ctatttcacaatattttgtactaaatagcgcatcgcagaataataacaatttgttcaaattc 162902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 10275769 - 10275848
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacatta-ttttgtactaaatagc 246  Q
    |||||||||  |||||||||||| |||||  | ||||||||||| ||||||||||| ||| || ||||||| ||||||||    
T  10275769 gaaaatagcaatttgttcaaattacgctacactacagtgttataacgccactatttgacaatatttttgtaataaatagc 10275848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 32250970 - 32251034
Alignment:
Q  178 gtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagc 246  Q
    |||||||||||||  |||||||||||    || |||||||||||||||||  |||||||||||||||||    
T  32250970 gtttgttcaaattgtgctatgcaaca----tacagcgccactatttcacagcattttgtactaaatagc 32251034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 54084369 - 54084298
Alignment:
Q  221 tttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatag 292  Q
    ||||||| ||||||| ||||||||||| ||   |||||| || || |||||||||||||||||| |||||||    
T  54084369 tttcacaatattttgcactaaatagcgtattgtggaacattatcagtttgttcaaattccgctatgcaatag 54084298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 54838694 - 54838655
Alignment:
Q  175 gcggtttgttcaaattccgctatgcaacagtgttatagcg 214  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  54838694 gcggtttgttcaaattccgctgtgcaacagtgctatagcg 54838655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 21754350 - 21754252
Alignment:
Q  166 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagc 264  Q
    |||||||| || | ||||| |||||  ||| ||||| |||| ||||||||| |||||| |||  | |||||||||||||| | ||| ||||||||||||    
T  21754350 cggaaaattgcagattgttgaaatttggctttgcaatagtgctatagcgccgctatttgacaacaatttgtactaaatagtgtatcgcggaacaatagc 21754252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Original strand, 34357994 - 34358028
Alignment:
Q  250 tcacggaacaatagcactttgttcaaattccgcta 284  Q
    |||||||||||||||| ||||||||||||||||||    
T  34357994 tcacggaacaatagcaatttgttcaaattccgcta 34358028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 36060389 - 36060339
Alignment:
Q  166 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgcc 216  Q
    |||||||||| ||||||||||||||  |||||||||||||  |||||||||    
T  36060389 cggaaaatagtggtttgttcaaattttgctatgcaacagtactatagcgcc 36060339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 197
Target Start/End: Complemental strand, 36303210 - 36303181
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctat 197  Q
    ||||||||||||||||||||||||||||||    
T  36303210 gaaaatagcggtttgttcaaattccgctat 36303181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 293
Target Start/End: Complemental strand, 4886322 - 4886195
Alignment:
Q  166 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagca 265  Q
    ||||||||||| |||||||||||||| |||| |||||||||||||| ||||  ||||| ||| | ||||| ||||||||||  ||| |||||||||||      
T  4886322 cggaaaatagctgtttgttcaaattctgctacgcaacagtgttataccgccgttattttacaatgttttgcactaaatagcatatcgcggaacaatagag 4886223  T
Q  266 ctttgttcaaattccgctaagcaatagc 293  Q
     |||||||||||||| ||| ||||||||    
T  4886222 atttgttcaaattccactatgcaatagc 4886195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 29166862 - 29166814
Alignment:
Q  167 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgc 215  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  29166862 ggaaaatagcagtttgttcaaattccactatgcaacagtgttatagcgc 29166814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 1912446 - 1912501
Alignment:
Q  166 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 221  Q
    |||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||||    
T  1912446 cggaaaatagaggtttgttcaaattccgctatgcaacggtgctatagcgtcactat 1912501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 262
Target Start/End: Complemental strand, 27968171 - 27968079
Alignment:
Q  170 aaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaata 262  Q
    ||||||| ||||| ||||||| || ||||| | |||||||| ||||||||||||||||  | ||||||||||||| |  |||| |||||||||    
T  27968171 aaatagcagtttgctcaaatttcgatatgctaaagtgttatggcgccactatttcacaaaactttgtactaaataacatatcatggaacaata 27968079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 33532432 - 33532486
Alignment:
Q  167 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 221  Q
    ||||||||||||||||||||||||| ||||  |||||||| |||||||| |||||    
T  33532432 ggaaaatagcggtttgttcaaattctgctactcaacagtgctatagcgcaactat 33532486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 13427709 - 13427786
Alignment:
Q  216 cactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagc 293  Q
    |||||||||||| ||||||||||||||||  |  ||| |||||||||||  |||||| |||||| |||| ||||||||    
T  13427709 cactatttcacaatattttgtactaaataatgtgtcatggaacaatagcgatttgttgaaattctgctatgcaatagc 13427786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 30530004 - 30530049
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 213  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||    
T  30530004 gaaaatagcggtttgttcaaattctgctacgcaacagtgctatagc 30530049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 20808936 - 20808888
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttat 210  Q
    |||||||||||||| ||||||||||  |||| |||||||||||||||||    
T  20808936 atcacggaaaatagtggtttgttcatgttccactatgcaacagtgttat 20808888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 10393994 - 10394041
Alignment:
Q  166 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 213  Q
    ||||||||||||||||||| ||||||||| ||| ||||||| ||||||    
T  10393994 cggaaaatagcggtttgtttaaattccgcaatggaacagtgctatagc 10394041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 29165951 - 29165912
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaa 201  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  29165951 atcacggaaaacagcggtttgttcaaattctgctatgcaa 29165912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 9163818 - 9163756
Alignment:
Q  216 cactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaatt 278  Q
    |||||||| |||  |||||||||||||||||| || ||||||||||||   ||||||||||||    
T  9163818 cactatttgacaacattttgtactaaatagcgtataacggaacaatagggatttgttcaaatt 9163756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 10156619 - 10156737
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaat 261  Q
    ||||| |||||||||||||||||  |||| |||||| ||| |||||||||  ||| |||||| |||  ||||| |||| ||||| |  || | |||||||    
T  10156619 atcaccgaaaatagcggtttgtttgaatttcgctatacaatagtgttataaggccgctatttgacaacattttatacttaatagtgtgtcgcagaacaat 10156718  T
Q  262 agcactttgttcaaattcc 280  Q
    |  | ||||||||||||||    
T  10156719 aaaaatttgttcaaattcc 10156737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 770388 - 770343
Alignment:
Q  232 tttgtactaaatagcgaatcacggaacaatagcactttgttcaaat 277  Q
    |||||||||||||||| |||||||||||||| |  |||||||||||    
T  770388 tttgtactaaatagcgtatcacggaacaataccgatttgttcaaat 770343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 19148507 - 19148632
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcact 267  Q
    ||||||||||||||||||||| |||||||  |||||||| |||| |||  ||||||  |  |||| |||| ||||||||  ||   ||||||||| |  |    
T  19148507 gaaaatagcggtttgttcaaactccgctacacaacagtgctatatcgctgctattttgctatattctgtattaaatagcatatactggaacaataactat 19148606  T
Q  268 ttgttcaaattccgctaagcaatagc 293  Q
    |||||||||||| | || ||||||||    
T  19148607 ttgttcaaattctgttatgcaatagc 19148632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 2730887 - 2730931
Alignment:
Q  267 tttgttcaaattccgctaagcaatagccgttatttaacaaaactg 311  Q
    |||||||||||||||||| || ||||||||||||| |||| ||||    
T  2730887 tttgttcaaattccgctatgctatagccgttatttgacaacactg 2730931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 3247448 - 3247408
Alignment:
Q  166 cggaaaatagcggtttgttcaaattccgctatgcaacagtg 206  Q
    ||||||| || ||||||||||||||||||||||| ||||||    
T  3247448 cggaaaacagtggtttgttcaaattccgctatgctacagtg 3247408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 7939993 - 7939941
Alignment:
Q  169 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 221  Q
    ||||||| || ||| |||||||||||||||| |||||| ||||| ||||||||    
T  7939993 aaaatagggggttgatcaaattccgctatgctacagtgctatagagccactat 7939941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 26494454 - 26494402
Alignment:
Q  232 tttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgcta 284  Q
    |||||||||||||||||||  | ||||||||||| || |||||||||| ||||    
T  26494454 tttgtactaaatagcgaattgcagaacaatagcaattagttcaaattctgcta 26494402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 27708106 - 27708158
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccacta 220  Q
    |||||||| ||||||||||||||| ||||| |||||||  |||||| ||||||    
T  27708106 gaaaatagtggtttgttcaaattctgctattcaacagttctatagcaccacta 27708158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 27727932 - 27727984
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccacta 220  Q
    |||||||| ||||||||||||||| ||||| |||||||  |||||| ||||||    
T  27727932 gaaaatagtggtttgttcaaattctgctattcaacagttctatagcaccacta 27727984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 30617211 - 30617344
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc---------gccactatttcacattattttgtactaaatagcgaatcacggaac 258  Q
    ||||||||||||||||||||||||| ||| |||||| || ||||||         |||||||||||||| ||||||||||||| ||||| ||||| ||||    
T  30617211 gaaaatagcggtttgttcaaattccactacgcaacaatgctatagcatcgctattgccactatttcacaatattttgtactaa-tagcgtatcacagaac 30617309  T
Q  259 aatagcactttgttcaaattccgctaagcaatagc 293  Q
    | ||||  |||||||||||||||||| ||||||||    
T  30617310 actagcgatttgttcaaattccgctatgcaatagc 30617344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 35522166 - 35522083
Alignment:
Q  179 tttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaata 262  Q
    ||||||||||||||||||||||| |  ||||||||||| |||||||||| ||||||| ||||||||| | |||||| |||||||    
T  35522166 tttgttcaaattccgctatgcaagaacgttatagcgccgctatttcacaatattttgcactaaatagtgtatcacgaaacaata 35522083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 26275479 - 26275615
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc------------gccactatttcacattattttgtactaaatagcgaatcacgg 255  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||             ||| |||||||||| ||||||||||||||||||| ||   ||    
T  26275479 gaaaatagcgatttgttcaaattccgctatgcaaaagtgttatagtagcaccggcatagccgctatttcacaatattttgtactaaatagcgtattttgg 26275578  T
Q  256 aacaatagcactttgttcaaattccgctaagcaatag 292  Q
    |||||||||  ||||||||||| |||||| |||||||    
T  26275579 aacaatagcgatttgttcaaatcccgctatgcaatag 26275615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 33714190 - 33714303
Alignment:
Q  178 gtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaat 277  Q
    ||||||||||||||||||| ||| |||||||||| || |  ||||||||| ||||||||||||||| ||  |||  ||||||| |||  |||||||||||    
T  33714190 gtttgttcaaattccgctacgcatcagtgttataacgtc--tatttcacaatattttgtactaaatggcttatcgtggaacaacagcgatttgttcaaat 33714287  T
Q  278 tccgctaagcaatagc 293  Q
    ||| |||  |||||||    
T  33714288 tccactatacaatagc 33714303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 292
Target Start/End: Complemental strand, 39305881 - 39305803
Alignment:
Q  214 gccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatag 292  Q
    |||||||||||||| |||| ||||||||||||||||||  ||||||||||   | ||||||||||| |||| |||||||    
T  39305881 gccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatag 39305803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 280
Target Start/End: Original strand, 47485998 - 47486108
Alignment:
Q  170 aaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcacttt 269  Q
    ||||||| ||||||| ||||||| | |  |||||||| ||| ||||| |||||||| | ||||||||||||||||||   || |||||||||||   |||    
T  47485998 aaatagcagtttgttaaaattccaccacacaacagtgctatggcgccgctatttcaaaatattttgtactaaatagcatgtcgcggaacaatagaggttt 47486097  T
Q  270 gttcaaattcc 280  Q
    |||||||||||    
T  47486098 gttcaaattcc 47486108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 415206 - 415129
Alignment:
Q  217 actatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagcc 294  Q
    |||||||||||  ||||||||||||||||| ||||||| |||||||||   |||||||||||| |||| || ||||||    
T  415206 actatttcacaacattttgtactaaatagcaaatcacgaaacaatagcgacttgttcaaattctgctatgctatagcc 415129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 8520876 - 8520799
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatag 245  Q
    |||||||| |||||| ||||||||||||| | |||| || |||||| ||||||||| |||  ||||||||| ||||||    
T  8520876 gaaaatagaggtttgatcaaattccgctacgtaacaatgctatagcaccactatttgacaacattttgtaccaaatag 8520799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 42647498 - 42647462
Alignment:
Q  167 ggaaaatagcggtttgttcaaattccgctatgcaaca 203  Q
    |||||||||||||||||||||||||||||| ||||||    
T  42647498 ggaaaatagcggtttgttcaaattccgctacgcaaca 42647462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 18968372 - 18968308
Alignment:
Q  179 tttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatag 245  Q
    |||||||||||| |||||||||| |||||||||  ||| |||||| |||  ||||||||||||||||    
T  18968372 tttgttcaaattacgctatgcaatagtgttata--gccgctatttgacaacattttgtactaaatag 18968308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 1099070 - 1099120
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatag 212  Q
    |||||| ||||||||| ||||||||||||| ||||  ||||||||||||||    
T  1099070 atcacgaaaaatagcgatttgttcaaattcagctacacaacagtgttatag 1099120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 34581627 - 34581593
Alignment:
Q  230 attttgtactaaatagcgaatcacggaacaatagc 264  Q
    |||||||||||||||||| ||||||||||||||||    
T  34581627 attttgtactaaatagcgtatcacggaacaatagc 34581593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 4448014 - 4447985
Alignment:
Q  167 ggaaaatagcggtttgttcaaattccgcta 196  Q
    ||||||||||||||||||||||||||||||    
T  4448014 ggaaaatagcggtttgttcaaattccgcta 4447985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 13939113 - 13939178
Alignment:
Q  180 ttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatag 245  Q
    |||||| |||||||||||||||||||| |||| |||   | ||||||| ||||||||| |||||||    
T  13939113 ttgttctaattccgctatgcaacagtgctataacgctggtgtttcacaatattttgtagtaaatag 13939178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 45554115 - 45554172
Alignment:
Q  166 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactattt 223  Q
    |||||||||| |||||| |||||||| || |||| |||||| | ||||||||||||||    
T  45554115 cggaaaatagtggtttgctcaaattctgccatgctacagtgctgtagcgccactattt 45554172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 294
Target Start/End: Original strand, 46899905 - 46900035
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaat 261  Q
    ||||| |||||| | | |||||||||||| | ||||||||||||||||||  ||  |||||||| ||||| |||| ||||| |||  ||||  | ||||     
T  46899905 atcacagaaaattgtgctttgttcaaatttccctatgcaacagtgttata--gctgctatttcatattatgttgtcctaaaaagcatatcattggacaaa 46900002  T
Q  262 agcactttgttcaaattccgctaagcaatagcc 294  Q
    |||| ||| ||||||||||  || |||||||||    
T  46900003 agcaattttttcaaattcctatatgcaatagcc 46900035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 13298575 - 13298523
Alignment:
Q  232 tttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgcta 284  Q
    |||||||||||||||  ||||| |||||||||   ||||||||||||||||||    
T  13298575 tttgtactaaatagcatatcacagaacaatagtgatttgttcaaattccgcta 13298523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 19984344 - 19984388
Alignment:
Q  219 tatttcacattattttgtactaaatagcgaatcacggaacaatag 263  Q
    ||||||||| |||||||||||||||| || |||| ||||||||||    
T  19984344 tatttcacaatattttgtactaaataacgtatcatggaacaatag 19984388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 33418389 - 33418349
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgtt 208  Q
    |||||||| |||||||| ||||||||||||||| |||||||    
T  33418389 gaaaatagtggtttgttaaaattccgctatgcagcagtgtt 33418349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 51882297 - 51882245
Alignment:
Q  171 aatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactattt 223  Q
    ||||||| ||||||||||||||||||||  || ||| | ||||||||||||||    
T  51882297 aatagcgatttgttcaaattccgctatgttaccgtgctgtagcgccactattt 51882245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 17124802 - 17124899
Alignment:
Q  166 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatag 263  Q
    ||||||| ||| ||||||||||||||| |||||| |||||||| |||| ||||||||| ||| || ||||| |||||||||| ||||||||| |||||    
T  17124802 cggaaaagagcagtttgttcaaattccactatgctacagtgttgtagcaccactatttaacaatactttgtcctaaatagcgcatcacggaataatag 17124899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 41970346 - 41970272
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaa 242  Q
    ||||||||||  |||||||||||| |||| |||||| || |||||||||||||||||||| ||||||||||||||    
T  41970346 gaaaatagcgccttgttcaaattctgctaagcaacaatgctatagcgccactatttcacaatattttgtactaaa 41970272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 311
Target Start/End: Original strand, 3147090 - 3147233
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcact 267  Q
    |||||||| ||||||||||||||||| || || |||||| |||||| ||||||||| ||| |  || || |||||||| | |||||| ||  |||||  |    
T  3147090 gaaaatagtggtttgttcaaattccgatacgctacagtgctatagcaccactatttgacaattcttagtgctaaatagtgtatcacgcaatgatagcggt 3147189  T
Q  268 ttgttcaaattccgctaagcaatagccgttatttaacaaaactg 311  Q
    || |||||||||| ||| || ||||||| ||||| |||| ||||    
T  3147190 ttcttcaaattccactacgctatagccgctatttgacaacactg 3147233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 4272886 - 4272831
Alignment:
Q  166 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 221  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||||||||| ||||    
T  4272886 cggaaaataacagtttgttcaaattccgctatgcaacagtgatatagcgcctctat 4272831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 9634890 - 9635020
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgcc---------actatttcacattattttgtactaaatagcgaatcacggaac 258  Q
    ||||||||||||||||||||||||||||| |||||| || |||||||||          |||||||| | |||||| ||| |||||| | ||  ||||||    
T  9634890 gaaaatagcggtttgttcaaattccgctacgcaacattgctatagcgccgctatagttgctatttcaaaatattttatacaaaatagtgtat-gcggaac 9634988  T
Q  259 aatagcactttgttcaaattccgctaagcaat 290  Q
    ||||||  ||||||||||||||||||||||||    
T  9634989 aatagccatttgttcaaattccgctaagcaat 9635020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 8928401 - 8928473
Alignment:
Q  219 tatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaata 291  Q
    ||||||| | ||||||||||||||||||| ||||  ||||||||||  ||||||||||| |||||| ||||||    
T  8928401 tatttcagaatattttgtactaaatagcgtatcatcgaacaatagcgatttgttcaaatcccgctacgcaata 8928473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 6586639 - 6586584
Alignment:
Q  166 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 221  Q
    ||||||||||||||||||||||||||| |||||||| |||  ||||||| ||||||    
T  6586639 cggaaaatagcggtttgttcaaattcctctatgcaatagttctatagcggcactat 6586584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 38346972 - 38346877
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatag 263  Q
    ||||||||||||| |||||||||  ||||  |||||||| |||||| || |||||| |||  |||||||| ||||||| | ||||| |||||||||    
T  38346972 gaaaatagcggttagttcaaattttgctacccaacagtgctatagcaccgctatttgacaacattttgtagtaaatagtgtatcacagaacaatag 38346877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 11257844 - 11257722
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaat 261  Q
    ||||||||| |||| |||||| |||||| ||||||  |||  |||| |||||||| |||||| |||  |||||||||||||||||  |||    ||||||    
T  11257844 atcacggaagatagtggtttgatcaaataccgctacacaattgtgtgatagcgccgctatttgacaacattttgtactaaatagcatatcgtataacaat 11257745  T
Q  262 agcactttgttcaaattccgcta 284  Q
    |||  |||||||| |||||||||    
T  11257744 agcgatttgttcatattccgcta 11257722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 41015018 - 41015064
Alignment:
Q  232 tttgtactaaatagcgaatcacggaacaatagcactttgttcaaatt 278  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||||    
T  41015018 tttgtactaaatagcatatcacggaacaatagcagtttgttcaaatt 41015064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 42440214 - 42440169
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 213  Q
    ||||| || ||||||||||||||||||||||| |||||||||||||    
T  42440214 gaaaacagtggtttgttcaaattccgctatgctacagtgttatagc 42440169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 6202649 - 6202574
Alignment:
Q  218 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagc 293  Q
    |||||||||||| ||||||||||||||||  |||||  | |||||||  |||||| |||||| |||| ||||||||    
T  6202649 ctatttcacattgttttgtactaaatagcatatcacatagcaatagcgatttgttaaaattctgctatgcaatagc 6202574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 41028419 - 41028340
Alignment:
Q  167 ggaaaatagcggtttgttcaaattccgctatgcaacagt-gttatagcgccactatttcacattattttgtactaaatag 245  Q
    |||||||||||| |||||||||||| |||| |||||||| ||| ||  |||  ||||||||| |||||||| ||||||||    
T  41028419 ggaaaatagcgggttgttcaaattcagctacgcaacagtggttctattgccggtatttcacaatattttgtgctaaatag 41028340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 33534632 - 33534677
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 213  Q
    ||||||||||||| |||||||||| |||| ||||||||| ||||||    
T  33534632 gaaaatagcggttggttcaaattctgctacgcaacagtgctatagc 33534677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 34156771 - 34156730
Alignment:
Q  172 atagcggtttgttcaaattccgctatgcaacagtgttatagc 213  Q
    ||||| |||||||||||||| |||||||||||||| ||||||    
T  34156771 atagctgtttgttcaaattctgctatgcaacagtgctatagc 34156730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 5516109 - 5516081
Alignment:
Q  171 aatagcggtttgttcaaattccgctatgc 199  Q
    |||||||||||||||||||||||||||||    
T  5516109 aatagcggtttgttcaaattccgctatgc 5516081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 30900054 - 30900188
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc---------gccactatttcacattattttgtactaaatagcgaatcacggaac 258  Q
    |||||||| |||||| ||||||||||||||| ||||||  ||||||         |||||||||||||| ||||||||||||||||| | ||| | ||||    
T  30900054 gaaaatagtggtttgctcaaattccgctatgtaacagtactatagcaccgcgatagccactatttcacaatattttgtactaaatagtgtatcgctgaac 30900153  T
Q  259 aatagcactttgttcaaattccgctaagcaatagc 293  Q
    ||||||  || ||||||||||||||| ||||||||    
T  30900154 aatagcgattcgttcaaattccgctatgcaatagc 30900188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 28727016 - 28726955
Alignment:
Q  169 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattatt 232  Q
    ||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||| ||||    
T  28727016 aaaatagcggtttgttcaaattccgctatgcaacagtgccata--gccactatttcacaatatt 28726955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 2898956 - 2898879
Alignment:
Q  214 gccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaata 291  Q
    |||||||||||||| ||||||| | ||||||||| |||||||||||||||   |||||  ||||||||||| ||||||    
T  2898956 gccactatttcacaatattttgcattaaatagcgtatcacggaacaatagtgatttgtcgaaattccgctaggcaata 2898879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 42114974 - 42114861
Alignment:
Q  169 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactt 268  Q
    |||||||| ||||||||||||||| || |||||||  | ||||||||| |||||| ||| |||||  |||| ||||||| ||   |||||||||||  ||    
T  42114974 aaaatagcagtttgttcaaattccactgtgcaacatggctatagcgccgctatttgacaatatttactactgaatagcgtattgtggaacaatagcgatt 42114875  T
Q  269 tgttcaaattccgc 282  Q
    || |||||||||||    
T  42114874 tgatcaaattccgc 42114861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 293
Target Start/End: Original strand, 23117299 - 23117435
Alignment:
Q  166 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgc---------cactatttcacattattttgtactaaatagcgaatcacgga 256  Q
    |||||||||| |||||||||||||||||||| |  |||||| ||||||||         ||||||||||||  ||||||| |||||||||  |||| |||    
T  23117299 cggaaaatagtggtttgttcaaattccgctacgtgacagtgctatagcgctgctatacccactatttcacaacattttgtgctaaatagcatatcatgga 23117398  T
Q  257 acaatagcactttgttcaaattccgctaagcaatagc 293  Q
    | ||||||  ||||||||||||| ||||  |||||||    
T  23117399 aaaatagcgatttgttcaaattctgctattcaatagc 23117435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 31809190 - 31809136
Alignment:
Q  166 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccacta 220  Q
    ||||||| ||||||||| ||||||||||||| ||||||||| ||||| |||||||    
T  31809190 cggaaaacagcggtttgatcaaattccgctacgcaacagtgctatagtgccacta 31809136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 32736037 - 32736087
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatag 212  Q
    ||||||| ||||||||||||||||||||||||||| |||||| || |||||    
T  32736037 atcacgggaaatagcggtttgttcaaattccgctacgcaacactgctatag 32736087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 48517386 - 48517440
Alignment:
Q  167 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 221  Q
    |||||||||||||||||||||||| |||||| ||||| || ||||||||| ||||    
T  48517386 ggaaaatagcggtttgttcaaatttcgctatacaacattgctatagcgccgctat 48517440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 1668351 - 1668388
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgc 199  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  1668351 atcacggaaaatagcggtttgttcaaattccactatgc 1668388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 3593037 - 3593089
Alignment:
Q  169 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 221  Q
    |||||||||||  |||||||||||||||||| ||||||||| ||||| |||||    
T  3593037 aaaatagcggtcagttcaaattccgctatgctacagtgttacagcgcaactat 3593089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 21173837 - 21173881
Alignment:
Q  167 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttata 211  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  21173837 ggaaaatagcggattgttcaaattccactatgcaactgtgttata 21173881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 24673360 - 24673404
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtg 206  Q
    ||||| |||||||| ||||||||||||||| ||||||||||||||    
T  24673360 atcacagaaaatagtggtttgttcaaattcagctatgcaacagtg 24673404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 9336467 - 9336384
Alignment:
Q  218 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagccgttattt 301  Q
    ||||||| || || ||||||| | |||||| ||||| ||||||||||  |||||||||||||  ||| |||||||||| |||||    
T  9336467 ctatttcgcagtaatttgtaccatatagcgtatcacagaacaatagcggtttgttcaaattctactatgcaatagccgctattt 9336384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 33711010 - 33710955
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactattt 223  Q
    |||| |||| |||| ||||||||| |||||| ||||||||||||||||| ||||||    
T  33711010 gaaagtagccgtttcttcaaattcggctatgtaacagtgttatagcgccgctattt 33710955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 192
Target Start/End: Complemental strand, 481105 - 481075
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattcc 192  Q
    |||||||||||||||||||||||||||||||    
T  481105 atcacggaaaatagcggtttgttcaaattcc 481075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 5627515 - 5627557
Alignment:
Q  170 aaatagcggtttgttcaaattccgctatgcaacagtgttatag 212  Q
    |||||||||||| |||||||||||||| ||||||||| |||||    
T  5627515 aaatagcggtttattcaaattccgctacgcaacagtgctatag 5627557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 6894350 - 6894400
Alignment:
Q  256 aacaatagcactttgttcaaattccgctaagcaatagccgttatttaacaa 306  Q
    |||||||||| |||||||||||||| ||| || ||||||| ||||||||||    
T  6894350 aacaatagcaatttgttcaaattccactacgctatagccgctatttaacaa 6894400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 22686055 - 22686120
Alignment:
Q  218 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgcta 284  Q
    |||||| ||| |||||||||||||| || | ||||||||||||||||| ||||  ||||||||||||    
T  22686055 ctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgaacaaattccgcta 22686120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 32612403 - 32612453
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccac 218  Q
    ||||||||||||||  |||||||||||||  |||||||| |||||||||||    
T  32612403 gaaaatagcggtttagtcaaattccgctacacaacagtgctatagcgccac 32612453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 28976554 - 28976599
Alignment:
Q  178 gtttgttcaaattccgctatgcaacagtgttatagcgccactattt 223  Q
    |||||||||||||||||||||||| || | |||||| |||||||||    
T  28976554 gtttgttcaaattccgctatgcaatagcgctatagcaccactattt 28976599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 293
Target Start/End: Original strand, 38622833 - 38622955
Alignment:
Q  169 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactt 268  Q
    |||||| | ||||||||||||| |||||| ||||| || ||||  ||| |||||| |||  ||||||| |||||||| | |||| ||||||||| |  ||    
T  38622833 aaaataacagtttgttcaaatttcgctatacaacaatgctata--gccgctatttgacaacattttgtgctaaatagtgtatcatggaacaatatcgatt 38622930  T
Q  269 tgttcaaattccgctaagcaatagc 293  Q
    | ||||||||| |||| || |||||    
T  38622931 tattcaaattctgctacgctatagc 38622955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 3151660 - 3151587
Alignment:
Q  170 aaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatag 245  Q
    |||||| ||||| ||||||||||||||  ||| |||||||  |||||||||||| |||  ||||||||||| ||||    
T  3151660 aaatagtggtttcttcaaattccgctacacaatagtgtta--gcgccactatttgacaacattttgtactatatag 3151587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 280
Target Start/End: Complemental strand, 5336610 - 5336502
Alignment:
Q  172 atagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgt 271  Q
    ||||||||||||||||||||  |||| | | |||| ||||||  | |||||| |||  | ||||| ||||| || | |||| |||||||||| | |||||    
T  5336610 atagcggtttgttcaaattctactatactatagtgctatagcaacgctatttaacaacactttgtgctaaacagtgtatcatggaacaataggaatttgt 5336511  T
Q  272 tcaaattcc 280  Q
    |||||||||    
T  5336510 tcaaattcc 5336502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 8558804 - 8558848
Alignment:
Q  169 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 213  Q
    |||||||  |||||||||||||||||||||| ||| |||||||||    
T  8558804 aaaatagtagtttgttcaaattccgctatgctacaatgttatagc 8558848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 24672799 - 24672843
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtg 206  Q
    |||| ||||||||||||||||||||||||| |||| |||| ||||    
T  24672799 atcatggaaaatagcggtttgttcaaattctgctacgcaatagtg 24672843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 28613185 - 28613237
Alignment:
Q  167 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccact 219  Q
    ||||||| || | ||||| ||||||||||||||||||||| |||||| |||||    
T  28613185 ggaaaatggcagattgttaaaattccgctatgcaacagtgctatagcaccact 28613237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 28892190 - 28892146
Alignment:
Q  169 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 213  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||    
T  28892190 aaaatagcagtttgttcaaattcggctatgctatagtgttatagc 28892146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 32231822 - 32231746
Alignment:
Q  218 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagcc 294  Q
    |||||||||| |||||||| ||||||| |  ||||| ||||| |||   ||||||||||||| |||| |||||||||    
T  32231822 ctatttcacaatattttgtgctaaataacatatcacagaacactagagatttgttcaaattctgctatgcaatagcc 32231746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 34925272 - 34925345
Alignment:
Q  167 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaa 242  Q
    |||||||||| |||||||||||||| ||||||| ||| || ||||  ||| |||||| |||  |||||||||||||    
T  34925272 ggaaaatagcagtttgttcaaattctgctatgctacaatgctata--gccgctatttgacaacattttgtactaaa 34925345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 17505048 - 17504954
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaata 262  Q
    ||||||||  |||||||||||||||||||  |||||||||||||| ||  |||||||||| ||||||| ||||||| ||  ||||| ||||||||    
T  17505048 gaaaatagttgtttgttcaaattccgctacacaacagtgttatagtgctgctatttcacaatattttgcactaaattgcatatcacagaacaata 17504954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 39597637 - 39597566
Alignment:
Q  218 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaa 289  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||||||  ||| || ||||||||||| ||||    
T  39597637 ctatttcacaatattttgtactaaatagcgtatcgcggaacaatagcgatttatttaaattccgctacgcaa 39597566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 291
Target Start/End: Complemental strand, 1813594 - 1813467
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaat 261  Q
    |||||||||||||  ||||||||||||||||||||  |||||||| ||||   || ||| |||||| | || |||||||| ||| | |||| ||||||||    
T  1813594 atcacggaaaataatggtttgttcaaattccgctacacaacagtgctata--accgctacttcacaatgttctgtactaagtagtgtatcatggaacaat 1813497  T
Q  262 agcactttgttcaaattccgctaagcaata 291  Q
    |||  |||||||||| ||| || |||||||    
T  1813496 agcggtttgttcaaactccactgagcaata 1813467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 16733727 - 16733777
Alignment:
Q  234 tgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgcta 284  Q
    |||||||||||||||||| | ||||||||||| ||| |||||||| |||||    
T  16733727 tgtactaaatagcgaatcgcagaacaatagcaatttattcaaatttcgcta 16733777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 11521815 - 11521860
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 213  Q
    ||||||||| |||||||||||||||||||||  |||||||| ||||    
T  11521815 gaaaatagctgtttgttcaaattccgctatgatacagtgttgtagc 11521860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 16866716 - 16866671
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 213  Q
    ||||||||||||| |||||||||| |||| ||||||||| ||||||    
T  16866716 gaaaatagcggttggttcaaattctgctacgcaacagtgctatagc 16866671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 38434232 - 38434183
Alignment:
Q  164 cacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 213  Q
    ||||||||||||| |||||||||||||| ||||||  |||||| ||||||    
T  38434232 cacggaaaatagcagtttgttcaaattctgctatgttacagtgctatagc 38434183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 44460379 - 44460330
Alignment:
Q  230 attttgtactaaatagcgaatcacggaacaatagcactttgttcaaattc 279  Q
    |||||||||||||||| | |||| |||||| ||||| |||||||||||||    
T  44460379 attttgtactaaatagtgtatcatggaacagtagcattttgttcaaattc 44460330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 24743065 - 24743013
Alignment:
Q  232 tttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgcta 284  Q
    |||||| ||||||||| ||||| |||||||||   ||||||||||||||||||    
T  24743065 tttgtattaaatagcgtatcacagaacaatagtggtttgttcaaattccgcta 24743013  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 29378555 - 29378503
Alignment:
Q  232 tttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgcta 284  Q
    ||||||| |||||||| ||| | |||||||| || ||||||||||||||||||    
T  29378555 tttgtacaaaatagcgtatcgcagaacaatatcaatttgttcaaattccgcta 29378503  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 33390662 - 33390714
Alignment:
Q  171 aatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactattt 223  Q
    ||||||| ||||||||||||| ||||||||| |  ||| ||||||||||||||    
T  33390662 aatagcgatttgttcaaattctgctatgcaataacgttgtagcgccactattt 33390714  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 35849490 - 35849518
Alignment:
Q  167 ggaaaatagcggtttgttcaaattccgct 195  Q
    |||||||||||||||||||||||||||||    
T  35849490 ggaaaatagcggtttgttcaaattccgct 35849518  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 1310190 - 1310115
Alignment:
Q  218 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagc 293  Q
    |||||||||| ||| ||||||||||||| | |||| |||||||||||| ||||||||||||| |||| | ||||||    
T  1310190 ctatttcacaatatattgtactaaatagtgtatcaaggaacaatagcaatttgttcaaattctgctacgaaatagc 1310115  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 9112519 - 9112433
Alignment:
Q  177 ggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatag 263  Q
    |||||||| ||||||| |||||||| | || | |||||||||||||||||| |||| |||||||||||||  ||| | |||||||||    
T  9112519 ggtttgtttaaattccactatgcaatattgctgtagcgccactatttcacaatattctgtactaaatagcatatcgcagaacaatag 9112433  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 43935150 - 43935224
Alignment:
Q  218 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatag 292  Q
    |||||||||| |||||||| ||||| |||| |||||||||||||||   |||||||||||||| ||| |||||||    
T  43935150 ctatttcacaatattttgtgctaaacagcgtatcacggaacaatagtcatttgttcaaattccactatgcaatag 43935224  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 42822706 - 42822651
Alignment:
Q  166 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 221  Q
    ||||||||| | ||||||||||||||| ||||||||||||| ||||||||| ||||    
T  42822706 cggaaaatatcagtttgttcaaattccactatgcaacagtgctatagcgccgctat 42822651  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 42822932 - 42822860
Alignment:
Q  167 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaa 241  Q
    |||||||||| ||| ||||||||||| ||||||| |||||  |||||  |||||||||||| |||||||||||||    
T  42822932 ggaaaatagcagttggttcaaattccactatgcagcagtgccatagc--cactatttcacagtattttgtactaa 42822860  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 41686218 - 41686271
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 221  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||| |||| ||||    
T  41686218 gaaaagagcggtttgttcaaatttcgctatgcaacagtgctataacgccgctat 41686271  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 16900879 - 16900939
Alignment:
Q  162 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatt 222  Q
    ||||||||||||||||||||| |||||||| |||| |||  |||| ||||||||| |||||    
T  16900879 atcacggaaaatagcggtttgctcaaattctgctacgcacgagtgctatagcgccgctatt 16900939  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 18899939 - 18900017
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagc 246  Q
    ||||||||  |||||||||||||||||||  |||||||| ||||  ||| |||||| |||  |||||||| ||||||||    
T  18899939 gaaaatagtagtttgttcaaattccgctacacaacagtgctatattgcctctatttgacaacattttgtaataaatagc 18900017  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 284
Target Start/End: Complemental strand, 12138270 - 12138165
Alignment:
Q  179 tttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaatt 278  Q
    |||||||||||||| | ||||||| ||| ||||| ||| || ||| |||  |||||||||||||||  | || | || ||||||||| |||||||| ||     
T  12138270 tttgttcaaattccacaatgcaactgtgctatagtgccgcttttttacaccattttgtactaaatattgtattatgggacaatagcaatttgttcagatc 12138171  T
Q  279 ccgcta 284  Q
    ||||||    
T  12138170 ccgcta 12138165  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 26466138 - 26466090
Alignment:
Q  167 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgc 215  Q
    |||||||| ||||||||||||||||| |||||| ||| || ||||||||    
T  26466138 ggaaaataacggtttgttcaaattccactatgctacaatgatatagcgc 26466090  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 33521154 - 33521105
Alignment:
Q  194 ctatgcaacagtgttatagcgccactatttcacattattttgtactaaatag 245  Q
    |||||||||| |||||||||  |||||||| ||||||||||| |||||||||    
T  33521154 ctatgcaacaatgttatagc--cactatttgacattattttgcactaaatag 33521105  T

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Target: scaffold0223 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 10620 - 10663
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttata 211  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  10620 gaaaatagcggtttgttcaaattctgctatgcaacagtattata 10663  T

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Target: scaffold0085 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 50868 - 50793
Alignment:
Q  218 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagc 293  Q
    |||||||||| ||| ||| ||||||||| | ||  ||||||||| ||| ||||||||||||| |||||||||||||    
T  50868 ctatttcacaatatcttgaactaaatagtgtatttcggaacaattgcaatttgttcaaattctgctaagcaatagc 50793  T

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Target: scaffold0349 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 6511 - 6563
Alignment:
Q  168 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccacta 220  Q
    |||||||| ||||||||||||||| ||||| |||||||  |||||| ||||||    
T  6511 gaaaatagtggtttgttcaaattctgctattcaacagttctatagcaccacta 6563  T

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