View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_24 (Length: 331)
Name: NF18549_low_24
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 3895278 - 3895519
Alignment:
| Q |
19 |
ctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggagctgagaaaac |
118 |
Q |
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| T |
3895278 |
ctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggagctgagaaaac |
3895377 |
T |
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| Q |
119 |
ggcagagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcg |
218 |
Q |
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| T |
3895378 |
ggcggagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcg |
3895477 |
T |
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| Q |
219 |
aaggatgcaacacaaaagatcaaggagactgttgttggaaag |
260 |
Q |
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| T |
3895478 |
aaggatgcaacacaaaagatcaaggagactgttgttggaaag |
3895519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 3895538 - 3895574
Alignment:
| Q |
282 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
318 |
Q |
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| T |
3895538 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
3895574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 3895146 - 3895197
Alignment:
| Q |
19 |
ctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaagga |
70 |
Q |
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| T |
3895146 |
ctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaagga |
3895197 |
T |
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