View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18549_low_29 (Length: 304)
Name: NF18549_low_29
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 51190661 - 51190951
Alignment:
| Q |
1 |
aacaatcggtacattctaagccttgtttggatccttttaaagaagagaatttgaagaaaggaagtgtttcaattactttttgttcaacgccagaatttat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51190661 |
aacaaacggtacattctaagccttgtttggatccttttaaagaagagaatttgaagaaaggaagtgtttcaattactttttgttcaacgccagaatttat |
51190760 |
T |
|
| Q |
101 |
agacctcgatcgagtttgtcctagattgttttgaagattaagagagtttgggtttagaagatgaataggagtaacacgacagaatttgacatatacaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51190761 |
agacctcgatcgagtttgtcctagattgttttgaagattaagagagtttgggtttagaagatgaataggagtaacacgacagaatttgacatatacaagt |
51190860 |
T |
|
| Q |
201 |
aagataaaagttaggaaaaacattatggaaagtactattattacaacacctttacttggagtaacaccttttggtaactctgccatgttct |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51190861 |
aagataaaagttaggaaaaacattatggaaagtactattattacaacacctttacttggagtaacaccttttggtaactctgccatgttct |
51190951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 33512415 - 33512353
Alignment:
| Q |
11 |
acattctaagccttgtttggatccttttaaagaagagaatttgaagaaaggaagtgtttcaat |
73 |
Q |
| |
|
|||||| || |||||||| || ||||| | ||||||||||||||| |||||||||| |||||| |
|
|
| T |
33512415 |
acattccaacccttgttttgaacctttgagagaagagaatttgaaaaaaggaagtgattcaat |
33512353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University