View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18549_low_34 (Length: 286)

Name: NF18549_low_34

Description: NF18549

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18549_low_34

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 236; E-Value: 1e-130

Query Start/End: Original strand, 18 - 269

Target Start/End: Original strand, 33736838 - 33737088

Alignment:

Q	18	gaagagggggagaatgttgatgttagcagtagcatatgtcattgaccttcttgttagttctagttatgcactttgttgatgaatttgtctctccccttag	117	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	33736838	gaagagagggagaatgttgatgttagcagtagcatatgtcat-gaccttcttgttagttctagttatgcactttgttgatgaatttgtctcttcccttag	33736936	T

Q	118	tgttatgtccagattaaataatgttttagttgctgctttgtggtcttctactagacctcgacctatcagtaacaaccaattgaattaaaatttggtatac	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33736937	tgttatgtccagattaaataatgttttagttgctgctttgtggtcttctactagacctcgacctatcagtaacaaccaattgaattaaaatttggtatac	33737036	T

Q	218	ttgaagaatgtgatagaatctcagaaaatcatatcatgtaggaagttatgct	269	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33737037	ttgaagaatgtgatagaatctcagaaaatcatatcatgtaggaagttatgct	33737088	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 210 - 260

Target Start/End: Original strand, 33621247 - 33621296

Alignment:

Q	210	tggtatacttgaagaatgtgatagaatctcagaaaatcatatcatgtagga	260	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33621247	tggtatacgtgaagaatgtgatagt-tctcaaaaaatcatatcatgtagga	33621296	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]