View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_35 (Length: 281)
Name: NF18549_low_35
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 51991269 - 51991538
Alignment:
| Q |
1 |
ctatattttgtgttttaattcttcatcattacatcacatatataatgaatagtattttattcaagttcattcaacttggaaatagtacaatttaaaagga |
100 |
Q |
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| T |
51991269 |
ctatattttgtgttttaattcttcatcattacatcacatatataatgaatagtattttattcaagttcattcaacttggaaatagtacaatttaaaagga |
51991368 |
T |
|
| Q |
101 |
aattgtttatctgttacaagaggaaaattaaacaagagataattgttcaattacacaattggctcgtactgccaaaacataaattagattgtaattttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51991369 |
aattgtttatctgttacaagaggaaaattaaacaagagataattgttcaattacacaattggctcgtactgccaaaacataaattagattgtaattgtac |
51991468 |
T |
|
| Q |
201 |
aacatggtgcagctcttgtacttttaggttttctcaacaaaacctcctttgggatcttaatgtgtatatt |
270 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51991469 |
aacatgttgcagctcttgtacttttaggttttctcaacaaaacctcctttgggatcttaatgtgtatatt |
51991538 |
T |
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