View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_36 (Length: 273)
Name: NF18549_low_36
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 33173302 - 33173408
Alignment:
| Q |
16 |
ccaataataccataacaaggacaaccagaaactccatcattctcctccaatggttatctttcaagtagtccaaacatgaaaatatatcagtgcacacaca |
115 |
Q |
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| T |
33173302 |
ccaataataccataacaaggacaaccagaaactccatcattctcctccaacggttatctttcaagtagtccaaacatgaaaatatatcagtgcacacaca |
33173401 |
T |
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| Q |
116 |
tggttgt |
122 |
Q |
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||||||| |
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| T |
33173402 |
tggttgt |
33173408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 33173471 - 33173559
Alignment:
| Q |
185 |
ttggatttgatttcatgcagggagccaaccaatcaatcatattttttatatcaacatgataaatgtgacaattatttatttgtgtagtc |
273 |
Q |
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| T |
33173471 |
ttggatttgatttcatgcagggagccaaccaatcaatcatattttttatatcaacatgataaatgtgacaattatttatttgtgtagtc |
33173559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 33147706 - 33147742
Alignment:
| Q |
16 |
ccaataataccataacaaggacaaccagaaactccat |
52 |
Q |
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| T |
33147706 |
ccaataataccataacaaggacaaccagaaactccat |
33147742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 33168890 - 33168938
Alignment:
| Q |
53 |
cattctcctccaatggttatctttcaagtagtccaaacatgaaaatata |
101 |
Q |
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| T |
33168890 |
cattctcctccaatggttatctttcaagtggttcaaaaattaaaatata |
33168938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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