View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18549_low_37 (Length: 268)

Name: NF18549_low_37
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18549_low_37
NF18549_low_37
[»] chr2 (3 HSPs)
chr2 (121-258)||(34901514-34901651)
chr2 (63-122)||(34901413-34901473)
chr2 (1-46)||(34901333-34901380)
[»] chr8 (1 HSPs)
chr8 (213-250)||(2687374-2687411)
[»] chr7 (1 HSPs)
chr7 (212-244)||(32881503-32881535)
[»] chr5 (2 HSPs)
chr5 (212-244)||(30332832-30332864)
chr5 (212-248)||(37498655-37498691)


Alignment Details
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 121 - 258
Target Start/End: Original strand, 34901514 - 34901651
Alignment:
Q  121 cagacgacgcgctgatttagcaaagtgaatgataagtcatacaataagaaggatcnnnnnnnnnnnnnnnnnttcgtagaagggccaatatcaaaaaacg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||                 ||||||||||||||||||| ||||||||    
T  34901514 cagacgacgcgctgatttagcaaagtgaatgataagtcatacaatgagaaggatcaaaaccaaaaaacaaaattcgtagaagggccaatattaaaaaacg 34901613  T
Q  221 agaagacaaataattcaaatttaaaaacctcgttcttc 258  Q
    |||||||||||||||||||||||||||||| |||||||    
T  34901614 agaagacaaataattcaaatttaaaaaccttgttcttc 34901651  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 34901413 - 34901473
Alignment:
Q  63 ctaaaataaatccggtaagatataaatattttgattttagttac-gtcgtcattcgttaca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34901413 ctaaaataaatccggtaagatataaatattttgattttagttacggtcgtcattcgttaca 34901473  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34901333 - 34901380
Alignment:
Q  1 atgttttgttaataaagtacacattttcttt--tgtgtaaattcgcgt 46  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||    
T  34901333 atgttttgttaataaagtacacattttcttttatgtgtaaattcgcgt 34901380  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 2687374 - 2687411
Alignment:
Q  213 aaaaaacgagaagacaaataattcaaatttaaaaacct 250  Q
    |||||||||||||||| | |||||||||||||||||||    
T  2687374 aaaaaacgagaagacagaaaattcaaatttaaaaacct 2687411  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 32881503 - 32881535
Alignment:
Q  212 caaaaaacgagaagacaaataattcaaatttaa 244  Q
    ||||||||||||||||||| |||||||||||||    
T  32881503 caaaaaacgagaagacaaaaaattcaaatttaa 32881535  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 30332832 - 30332864
Alignment:
Q  212 caaaaaacgagaagacaaataattcaaatttaa 244  Q
    ||||||||||||||||||| |||||||||||||    
T  30332832 caaaaaacgagaagacaaaaaattcaaatttaa 30332864  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 37498691 - 37498655
Alignment:
Q  212 caaaaaacgagaagacaaataattcaaatttaaaaac 248  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  37498691 caaaaaatgagaagacaaaaaattcaaatttaaaaac 37498655  T

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