View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_4 (Length: 634)
Name: NF18549_low_4
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 53 - 623
Target Start/End: Original strand, 46911511 - 46912077
Alignment:
| Q |
53 |
aattgagttacttgtgaatagattatcaagtataaataagttgtttaaccatcaattcatttaagactatttcaccaaaactttaatccaaatgaataca |
152 |
Q |
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| T |
46911511 |
aattgagttacttgtgaatagattatcaagtataaataagttgtttaaccatcaattcatttaagactatttcaccaaaactttaatccaaatgaataca |
46911610 |
T |
|
| Q |
153 |
tgcggttgaaatagcatttccactcttataaaaagaaaaaccattcaaacaaccctgaatcaggaatttgtcccttacttctaacaccgggaccacccac |
252 |
Q |
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| T |
46911611 |
tgcggttgaaatagcatttccactcttataaaaagaaaaaccattcaaacaaccctgaatcagga-tttgtcccttacttctaacaccgggaccacccac |
46911709 |
T |
|
| Q |
253 |
atgtattattagtcatgtaggactagggatcattttcaattttcttccaaatatatacgtgtgtgtgtcaatgtctcaccctgtttgtacataaaaagaa |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46911710 |
atgtattattagtcatgtaggactagggatcattttcaattttcttccaaatatatacgtgt--gtgtcaatgtctcaccctgtttgtacataaaaagaa |
46911807 |
T |
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| Q |
353 |
aagtagtattccttattaacttattaactataggctataggtatggatcaaaggaactgaaattaaatttgctaaaacatttcgttgtttggactcacct |
452 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46911808 |
aaatagtattccttattaacttattaactataggctataggtatggatcaaaggaactgaaattaattttgctaaaacatttcgttgtttggactcacct |
46911907 |
T |
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| Q |
453 |
gaagttatttactaattagtgtacatccaatatgttatnnnnnnnnnnnnnnnnttgacactagcgtactcacgtctcatacatagctaatctccatcct |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46911908 |
gaagttatttactaattagtgtacatccaatatgttat-aaaaaatgtaaaaaattgacactagcgtactcacgtctcatacatagctaatctccatcct |
46912006 |
T |
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| Q |
553 |
tttgtcttatattggattagcaatttactatcaacatcgtgctatttatatggatttttatctttgtctgt |
623 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46912007 |
tttgtcttatattggattagcactttactatcaacatcgtgctatttatatggatttttatctttgtctgt |
46912077 |
T |
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