View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_40 (Length: 262)
Name: NF18549_low_40
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 2047677 - 2047499
Alignment:
| Q |
11 |
tggacatcatcattccagctgtttagctgctccaccttggtatgtagctatcctcccata----------caaagtggagtgtacacttcaaaaggaatt |
100 |
Q |
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| T |
2047677 |
tggacatcatcattccagctgtttagctgctccaccttggtatgtagctatcctcccatatcctcccatacaaagtggagtgtacacttcaaaaggaatt |
2047578 |
T |
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| Q |
101 |
ttgaaaatataattattagtttgatggacaaagagatatgttaaattgttttaggtcgcgtcacctttttatacatttc |
179 |
Q |
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| T |
2047577 |
ttaaagttataattattagtttgatggacaaagagatatgttaaattgttttaggtcgcgtcacctttttatacatttc |
2047499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 2046466 - 2046400
Alignment:
| Q |
177 |
ttcatttggaccataaaatcaaatattccacggaaatatcaaatttggaaatacaaaaactaaaatc |
243 |
Q |
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| T |
2046466 |
ttcatttgaaccataaaatcaaatattccacggaaatatcaaatttggaaatacaaaaactaaaatc |
2046400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 2046399 - 2046350
Alignment:
| Q |
194 |
atcaaatattccacggaaatatcaaatttggaaatacaaaaactaaaatc |
243 |
Q |
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| T |
2046399 |
atcaaatattccacggaaatatcaaatttggaaatacaaaaactaaaatc |
2046350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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