View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_42 (Length: 251)
Name: NF18549_low_42
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 51976804 - 51976574
Alignment:
| Q |
6 |
agtgagaagaatcattgattcaacggcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttccaac |
105 |
Q |
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| T |
51976804 |
agtgagacaaatcattgattcaacggcaatgtcattgatcaaattaataggcgaagacacaatccttacgataacattacgaaaaccaactttttccaac |
51976705 |
T |
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| Q |
106 |
caaagccacatagcaagcaatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaacagaa |
205 |
Q |
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| T |
51976704 |
cacagccacatagcaagcaatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtacagttctctgtccatttggtggaacagaa |
51976605 |
T |
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| Q |
206 |
gaatatcgtctcagagaaacagtgaaagaaa |
236 |
Q |
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| T |
51976604 |
gaatatcgtctcagagaaacagtgaaagaaa |
51976574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 51972370 - 51972178
Alignment:
| Q |
16 |
atcattgattcaacggcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttccaaccaaagccaca |
115 |
Q |
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| T |
51972370 |
atcattgattcatcaacaatttcattgatcaaaatgataggcaaagacataatgtttttcacaacgttaggaaaaccaactttttccagccaaagccaca |
51972271 |
T |
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| Q |
116 |
tagcaagcaatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaacagaagaa |
208 |
Q |
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| T |
51972270 |
tagcaagcaatcgcatggactcagatggatcacgagaaaggttggtgacaaggattttgtagaggtctctgtccatttgatggaacataagaa |
51972178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 17711851 - 17712042
Alignment:
| Q |
17 |
tcattgattcaacggcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttccaaccaaagccacat |
116 |
Q |
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||||||||||| | ||||| |||||||||||| |||| ||| |||||| ||| ||| | ||| ||| ||||||||||||||||||||||||||||||| |
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| T |
17711851 |
tcattgattcatcagcaatttcattgatcaaaataattggcaaagacataatatttttcacaacgttatgaaaaccaactttttccaaccaaagccacat |
17711950 |
T |
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| Q |
117 |
agcaagcaatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaacagaagaa |
208 |
Q |
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| T |
17711951 |
agcaagcaatcgcatggactcggatggatcacgagaaaggtctgtgacaaggattttgtagaggtctctgtccatttggtggatcaggagaa |
17712042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 17726736 - 17726926
Alignment:
| Q |
18 |
cattgattcaacggcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttccaaccaaagccacata |
117 |
Q |
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| T |
17726736 |
cattgtttcatcagcaatctcattgatcaaaataataggcaaagacataatatttttcacaacgttatgaaaaccaactttttccaaccaaagccacata |
17726835 |
T |
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| Q |
118 |
gcaagcaatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaacagaagaa |
208 |
Q |
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| T |
17726836 |
gcaagcaatcgcatggactcggatggatcacgagaaagttctgtgacaaggattttgtagaggtctctatccacttggtggaacagaagaa |
17726926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 40784241 - 40784433
Alignment:
| Q |
16 |
atcattgattcaacggcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttccaaccaaagccaca |
115 |
Q |
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|||||||||||||| |||| |||| ||||||| ||| |||| ||||||||||| ||| | ||||| | ||||||||||| |||||| ||||||||||| |
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| T |
40784241 |
atcattgattcaacaacaatttcatcgatcaaaataacaggcaaagacacaatctttttcacaacatcatgaaaaccaactctttccagccaaagccaca |
40784340 |
T |
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| Q |
116 |
tagcaagcaatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaacagaagaa |
208 |
Q |
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|||||||||| | || | | |||||||||||||| || ||||||||||| ||||| || ||||||||| || |||||||||||||| |
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| T |
40784341 |
tagcaagcaactgtgcagacttatatggatcacgagaaaggttggtgacaaggatattgtagaggtctctgtccgatttgtggaacagaagaa |
40784433 |
T |
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