View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_45 (Length: 243)
Name: NF18549_low_45
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 11656045 - 11655831
Alignment:
| Q |
18 |
acaactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaatccgttattaccaacaaaacgagctacggaacaatctggggagaac |
117 |
Q |
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| T |
11656045 |
acaactcatgctagggagactcaaattctccaccatcgcaatatcattgttgaatccgtcattaccaacaaaacgagctaccgaacaatctggggagaac |
11655946 |
T |
|
| Q |
118 |
aagcttgaggtttcatactcttttccacctcccatcattggcatttttgcaccaatgttgacacgactcacatagttaggtttatatgtttggcccaaca |
217 |
Q |
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| T |
11655945 |
aagcttgttgtttcatactcttttccacctcccattattggcatttttgctccaatgttcacacgactcacatagttaggtttatatgtttggcccaaca |
11655846 |
T |
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| Q |
218 |
caccactcacttcat |
232 |
Q |
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||||||| ||||||| |
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| T |
11655845 |
caccacttacttcat |
11655831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 11669812 - 11669599
Alignment:
| Q |
19 |
caactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaatccgttattaccaacaaaacgagctacggaacaatctggggagaaca |
118 |
Q |
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||||||||||||||||| | | || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11669812 |
caactcatgctagggagcataagatcttccaccatcgcaatatcattgttgaatccgtcattaccaacaaaacgagctacggaacaatctggggagaaca |
11669713 |
T |
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| Q |
119 |
agcttgaggtttcatactcttttccacctcccatcattggcatttttgcaccaatgttgacacgactcacatagttaggtttatatgtttggcccaacac |
218 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11669712 |
agcttgttgtttcatactcttttccacctcccattattggcattttcgctccaatgttcacacgactcacatagttagatttatatgtttggcccaacac |
11669613 |
T |
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| Q |
219 |
accactcacttcat |
232 |
Q |
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|||||| ||||||| |
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| T |
11669612 |
accacttacttcat |
11669599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 11664498 - 11664288
Alignment:
| Q |
22 |
ctcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaatccgttattaccaacaaaacgagctacggaacaatctggggagaacaagc |
121 |
Q |
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|||| ||||||||| |||||||||||| || |||||| ||||| ||||| || || |||| ||||| || || ||||||||||| |||||||||| |
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| T |
11664498 |
ctcaagctagggagggccaaattctccacaattccaatatttttgtttaatccattgttcccaatgaaacgtgccacagaacaatctggagagaacaagc |
11664399 |
T |
|
| Q |
122 |
ttgaggtttcatactcttttccacctcccatcattggcatttttgcaccaatgttgacacgactcacatagttaggtttatatgtttggcccaacacacc |
221 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11664398 |
ttgaggtttcatactcttttccacctcccattattggcatttttgcaccaatgttcacacgactcacatagttaggtttatatgtttggcccaacacacc |
11664299 |
T |
|
| Q |
222 |
actcacttcat |
232 |
Q |
| |
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| | ||||||| |
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| T |
11664298 |
atttacttcat |
11664288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 7344064 - 7344208
Alignment:
| Q |
88 |
aaacgagctacggaacaatctggggagaacaagcttgaggtttcatactcttttccacctcccatcattggcatttttgcaccaatgttgacacgactca |
187 |
Q |
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||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||| |||| ||||| ||||||||| |||| |||||||| |||||||||| |
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| T |
7344064 |
aaacgtgctacagaacaatctggagagaacaagcttgacgtttcatactcttttgcaccgcccattattggcattcttgctccaatgttcacacgactca |
7344163 |
T |
|
| Q |
188 |
catagttaggtttatatgtttggcccaacacaccactcacttcat |
232 |
Q |
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| T |
7344164 |
catagttaggtttatatgtttggcccaacacgccactcacttcat |
7344208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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