View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_49 (Length: 237)
Name: NF18549_low_49
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33159950 - 33159730
Alignment:
| Q |
1 |
caacgataatgcatgactcttggctacatcacacaagggttacataaaactgatagtaatctcacactcaaacaactgaccacaaagaaaccataagaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33159950 |
caacgataatgcatgactcttggctacatcacacaagggttacataaaactgatagtaatctcacactcaaacaactgaccacaaagaaaccataagaga |
33159851 |
T |
|
| Q |
101 |
aaatgcaataatcgaacaaagtacatagctcgccaatgctcaaacccatgaagctacctaatgctaaccattatggcagcacctgtagctgatatacact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33159850 |
aaatgcaataatcgaacaaagtacatagctcgccaatgctcaaacccatgaagctacctaatgctaaccattatggcagcacttgtagctgatatacact |
33159751 |
T |
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| Q |
201 |
tgcattgtgcggtgacaatct |
221 |
Q |
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| ||||||||||||||||||| |
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| T |
33159750 |
tccattgtgcggtgacaatct |
33159730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33182793 - 33182574
Alignment:
| Q |
1 |
caacgataatgcatgactcttggctacatcacacaagggttacataaaactgatagtaatctcacactcaaacaactgaccacaaagaaaccataagaga |
100 |
Q |
| |
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|||| |||||||| |||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| | || | |||| | |
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| T |
33182793 |
caacaataatgcacgactcttggctacatcacacgaggggtacataaaactgatagtgatctcacactcaaacaactgaccacagaaaacttagaaga-a |
33182695 |
T |
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| Q |
101 |
aaatgcaataatcgaacaaagtacatagctcgccaatgctcaaacccatgaagctacctaatgctaaccattatggcagcacctgtagctgatatacact |
200 |
Q |
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||||||||||||| |||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33182694 |
aaatgcaataatcaaacatagtacataacttgccaatgctaaaacccatgaagctacctaatgctaaccattatggcagcacttgtagctgatatacact |
33182595 |
T |
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| Q |
201 |
tgcattgtgcggtgacaatct |
221 |
Q |
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| ||||||||||||||||||| |
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| T |
33182594 |
tccattgtgcggtgacaatct |
33182574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 33141163 - 33141110
Alignment:
| Q |
168 |
ccattatggcagcacctgtagctgatatacacttgcattgtgcggtgacaatct |
221 |
Q |
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||||||||||| ||| ||||||| ||| |||||| ||||||||||||||||||| |
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| T |
33141163 |
ccattatggcaacacttgtagctaataaacacttccattgtgcggtgacaatct |
33141110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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