View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18549_low_5 (Length: 626)

Name: NF18549_low_5
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18549_low_5
NF18549_low_5
[»] chr1 (4 HSPs)
chr1 (17-606)||(52164842-52165431)
chr1 (136-249)||(52165409-52165522)
chr1 (505-546)||(25184777-25184818)
chr1 (505-546)||(52164695-52164736)
[»] chr4 (6 HSPs)
chr4 (144-249)||(50972654-50972759)
chr4 (156-242)||(50972520-50972607)
chr4 (139-249)||(50972413-50972523)
chr4 (21-128)||(50972741-50972850)
chr4 (237-331)||(50972769-50972863)
chr4 (179-249)||(50972341-50972411)
[»] chr7 (8 HSPs)
chr7 (505-566)||(22728964-22729025)
chr7 (144-249)||(11071908-11072013)
chr7 (144-219)||(11071764-11071839)
chr7 (237-331)||(11072023-11072118)
chr7 (507-566)||(22323481-22323540)
chr7 (144-219)||(11071618-11071695)
chr7 (46-111)||(11072022-11072088)
chr7 (505-550)||(22323630-22323675)
[»] chr8 (1 HSPs)
chr8 (529-566)||(23838575-23838612)


Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 17 - 606
Target Start/End: Complemental strand, 52165431 - 52164842
Alignment:
Q  17 tcaaatttgaaatgaatggcaaaggagcataataaatggcaaaggagtgagaatgtcaaatgtgagaatttgaaatgctttaacgacatttaaatgatac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52165431 tcaaatttgaaatgaatggcaaaggagcataataaatggcaaaggagtgagaatgtcaaatgtgagaatttgaaatgctttaacgacatttaaatgatac 52165332  T
Q  117 ggtcaaacaatttgaaatgaatgaacgtttaatgtgtgtcaaaggagcatttaagagattgatcttaaatgagaaggtcgaacaattgcatttaaatgag 216  Q
     ||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  52165331 cgtcaaacaatttgaaatgaatgaacgtttcatgtctgacaaaggagcatttaagagattgatcttaaatgagaaggtcaaacaattgcatttaaatgag 52165232  T
Q  217 gagggaattttcaattttgaaatgaatggcaaatgagtgagaaggtcgaatttgataaattgaaatgctttaagaacatttaaatgataaggtcaaacaa 316  Q
    ||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52165231 gagagaattttcaattttgaaatgaatggcaaatgagtgagaagttcaaatttgataaattgaaatgctttaagaacattcaaatgataaggtcaaacaa 52165132  T
Q  317 ttgaatttgaaatgattttaagcttacgccgcatatttatggtaagaagagatagagttttatgatttgtgaggattttgtttggaaaaaagtcaaatga 416  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52165131 ttgaatttgaaatgattttaagcctacatcgcatatttatggtaagaagagatagagttttatgctttgtgaggattttgtttggaaaaaagtcaaatga 52165032  T
Q  417 ttctgataactaatggcgtaggagtgaatcaatggcgttgaagctttgatctgcgtcgggagctttaattatgcgcaagagtgaatcaattgcgtgttaa 516  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  52165031 ttctgataactaatggcgtaggagtgaatcaatggcattgaagctttgatctacgtcgggagctttaatcatgcgcaagagtgaatcaattgcgtgttaa 52164932  T
Q  517 aaggatgaggacgtcaaaggtgtgaattaaatgcaatagaagaaattcaggctgattagaaaatgcactcaatctttctaaatcaagctt 606  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52164931 aaggatgaggacgtcaaatgtgtgaattaaatgcaatagaagaaattcaggctgattaggaaatgcactcaatctttctaaatcaagctt 52164842  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 136 - 249
Target Start/End: Complemental strand, 52165522 - 52165409
Alignment:
Q  136 aatgaacgtttaatgtgtgtcaaaggagcatttaagagattgatcttaaatgagaaggtcgaacaattgcatttaaatgaggagggaattttcaattttg 235  Q
    ||||||| ||||||||||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||||    
T  52165522 aatgaacatttaatgtgtggcaaaggaacatttaagagattcatcttaaatgagaaggtcaaacaattgcatttaaatgaggatgaaattttcaaatttg 52165423  T
Q  236 aaatgaatggcaaa 249  Q
    ||||||||||||||    
T  52165422 aaatgaatggcaaa 52165409  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 546
Target Start/End: Complemental strand, 25184818 - 25184777
Alignment:
Q  505 attgcgtgttaaaaggatgaggacgtcaaaggtgtgaattaa 546  Q
    ||||||||||||| ||||||||| |||||| |||||||||||    
T  25184818 attgcgtgttaaagggatgaggaagtcaaatgtgtgaattaa 25184777  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 546
Target Start/End: Complemental strand, 52164736 - 52164695
Alignment:
Q  505 attgcgtgttaaaaggatgaggacgtcaaaggtgtgaattaa 546  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||    
T  52164736 attgcgtgttaaagggatgaggaagtcaacggtgtgaattaa 52164695  T

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Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 144 - 249
Target Start/End: Original strand, 50972654 - 50972759
Alignment:
Q  144 tttaatgtgtgtcaaaggagcatttaagagattgatcttaaatgagaaggtcgaacaattgcatttaaatgaggagggaattttcaattttgaaatgaat 243  Q
    |||| |||||| |||||||  |||||| ||||||||||||||| |||||||| |||||||||||||||||||||||  ||||||||  ||||| ||||||    
T  50972654 tttattgtgtggcaaaggataatttaaaagattgatcttaaataagaaggtcaaacaattgcatttaaatgaggagaaaattttcagatttgatatgaat 50972753  T
Q  244 ggcaaa 249  Q
    ||||||    
T  50972754 ggcaaa 50972759  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 50972520 - 50972607
Alignment:
Q  156 caaaggagcatttaagagattgatcttaaatgagaaggtcgaacaattgcatttaaatgaggagggaattttc-aattttgaaatgaa 242  Q
    |||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| | |||||||| ||| ||||||||||||||    
T  50972520 caaaggagcaattaagagatttatcttaaatgagaaggtcaaacaattgcatttaaatcatgagggaatattcaaattttgaaatgaa 50972607  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 50972413 - 50972523
Alignment:
Q  139 gaacgtttaatgtgtgtcaaaggagcatttaagagattgatcttaaatgagaaggtcgaacaattgcatttaaatgaggagggaattttcaattttgaaa 238  Q
    |||| ||||||||||| |||| |||||||||||||||||||| |||| ||||||||  ||||| |||||||||  | ||||| ||||||| | |||||||    
T  50972413 gaacatttaatgtgtgccaaatgagcatttaagagattgatcataaacgagaaggttaaacaaatgcatttaatcggggaggaaattttcgaatttgaaa 50972512  T
Q  239 tgaatggcaaa 249  Q
    |||||||||||    
T  50972513 tgaatggcaaa 50972523  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 50972741 - 50972850
Alignment:
Q  21 atttgaaatgaatggcaaaggagcat--aataaatggcaaaggagtgagaatgtcaaatgtgagaatttgaaatgctttaacgacatttaaatgatacgg 118  Q
    |||||| |||||||||||||  ||||  ||| |||| |||||||||||||| || ||||||||||||| |||||||||||| ||||||||||||| | ||    
T  50972741 atttgatatgaatggcaaagatgcatttaatgaatgacaaaggagtgagaaggttaaatgtgagaattcgaaatgctttaaggacatttaaatgagaagg 50972840  T
Q  119 tcaaacaatt 128  Q
    ||||||||||    
T  50972841 tcaaacaatt 50972850  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 50972769 - 50972863
Alignment:
Q  237 aatgaatggcaaatgagtgagaaggtcgaatttgataaattgaaatgctttaagaacatttaaatgataaggtcaaacaattgaatttgaaatga 331  Q
    |||||||| |||| ||||||||||||  ||| ||| || | ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  50972769 aatgaatgacaaaggagtgagaaggttaaatgtgagaattcgaaatgctttaaggacatttaaatgagaaggtcaaacaattaaatttgaaatga 50972863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 50972341 - 50972411
Alignment:
Q  179 tcttaaatgagaaggtcgaacaattgcatttaaatgaggagggaattttcaattttgaaatgaatggcaaa 249  Q
    |||||||||||||| || ||| ||||  ||||||||| ||| |||||||||| ||||||||||||| ||||    
T  50972341 tcttaaatgagaagttcaaacgattgtctttaaatgatgagagaattttcaaatttgaaatgaatgacaaa 50972411  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 505 - 566
Target Start/End: Complemental strand, 22729025 - 22728964
Alignment:
Q  505 attgcgtgttaaaaggatgaggacgtcaaaggtgtgaattaaatgcaatagaagaaattcag 566  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  22729025 attgcgtgttaaatggatgaggaagtcaaaggtgtgaattaaatgcaatagaataaattcag 22728964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 144 - 249
Target Start/End: Original strand, 11071908 - 11072013
Alignment:
Q  144 tttaatgtgtgtcaaaggagcatttaagagattgatcttaaatgagaaggtcgaacaattgcatttaaatgaggagggaattttcaattttgaaatgaat 243  Q
    |||| ||||||  |||||||||||||  ||||||||||||||  |||||||  || |||||||||||||||||||| ||||||||   ||||| ||||||    
T  11071908 tttattgtgtggtaaaggagcatttagaagattgatcttaaagaagaaggttaaagaattgcatttaaatgaggagagaattttcggatttgatatgaat 11072007  T
Q  244 ggcaaa 249  Q
    ||||||    
T  11072008 ggcaaa 11072013  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 11071764 - 11071839
Alignment:
Q  144 tttaatgtgtgtcaaaggagcatttaagagattgatcttaaatgagaaggtcgaacaattgcatttaaatgaggag 219  Q
    |||| ||||||  ||| |||||||||| ||||||||||||||  |||||||| |||||||||||||||||||||||    
T  11071764 tttattgtgtggtaaatgagcatttaaaagattgatcttaaagaagaaggtcaaacaattgcatttaaatgaggag 11071839  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 11072023 - 11072118
Alignment:
Q  237 aatgaatggcaaatgagtgagaaggtcgaatttgataaattgaaatgc-tttaagaacatttaaatgataaggtcaaacaattgaatttgaaatga 331  Q
    |||||||| |||||||||||||||||| ||| ||| || | ||||||| |||||| |||||||||| | ||  |||||||||||||||||||||||    
T  11072023 aatgaatgacaaatgagtgagaaggtcaaatgtgagaattcgaaatgcttttaaggacatttaaattagaaattcaaacaattgaatttgaaatga 11072118  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 507 - 566
Target Start/End: Original strand, 22323481 - 22323540
Alignment:
Q  507 tgcgtgttaaaaggatgaggacgtcaaaggtgtgaattaaatgcaatagaagaaattcag 566  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||    
T  22323481 tgcgtgttaaatggatgaggaagtcaaaggtgtgaattaaatgcaatagaataaaatcag 22323540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 11071618 - 11071695
Alignment:
Q  144 tttaatgtgtgtcaaaggagcatttaaga--gattgatcttaaatgagaaggtcgaacaattgcatttaaatgaggag 219  Q
    |||| ||||||  |||||||||||||| |  |||||||||||||  |||||||| |||||||||||||||||||||||    
T  11071618 tttattgtgtggtaaaggagcatttaaaaaagattgatcttaaagaagaaggtcaaacaattgcatttaaatgaggag 11071695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 11072022 - 11072088
Alignment:
Q  46 taataaatggcaaaggagtgagaatgtcaaatgtgagaatttgaaatgc-tttaacgacatttaaat 111  Q
    |||| |||| |||| ||||||||| |||||||||||||||| ||||||| ||||| |||||||||||    
T  11072022 taatgaatgacaaatgagtgagaaggtcaaatgtgagaattcgaaatgcttttaaggacatttaaat 11072088  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 550
Target Start/End: Original strand, 22323630 - 22323675
Alignment:
Q  505 attgcgtgttaaaaggatgaggacgtcaaaggtgtgaattaaatgc 550  Q
    |||||||||||||||| |||||| ||||||  ||||||||||||||    
T  22323630 attgcgtgttaaaagggtgaggaggtcaaacctgtgaattaaatgc 22323675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 566
Target Start/End: Complemental strand, 23838612 - 23838575
Alignment:
Q  529 gtcaaaggtgtgaattaaatgcaatagaagaaattcag 566  Q
    |||||||||||||||||||||||||||||  |||||||    
T  23838612 gtcaaaggtgtgaattaaatgcaatagaatgaattcag 23838575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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