View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18549_low_52 (Length: 225)
Name: NF18549_low_52
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_52 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 36199838 - 36199994
Alignment:
| Q |
49 |
cctatacaattacataattatttatcaggtcaaaacatagtctgttaggatatcccattcaattgatcaaaacacaagatatcaaaagaaattttctttt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36199838 |
cctatacaattacataattatttatcag-tcaaaacatagtctgttaggatatcccattcaattgatcaaaacacaagatatcaaaagaaattttctttt |
36199936 |
T |
|
| Q |
149 |
ctcaattttattgatcaatcatcattctaattagaaccattactttgtttattcattt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36199937 |
ctcaattttattgatcaatcatcattctaattagaaccattactttgtttattcattt |
36199994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 36214268 - 36214303
Alignment:
| Q |
53 |
tacaattacataattatttatcaggtcaaaacatag |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
36214268 |
tacaattacataattatttatcaggtcaaaacatag |
36214303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 16958304 - 16958394
Alignment:
| Q |
99 |
tatcccattcaattgatcaaaacacaagatatcaaaagaaattttcttttctcaattttattgatcaatcatcattctaattagaaccatta |
190 |
Q |
| |
|
||||||||||||||||| | |||| ||||||| |||||| | |||||||||||||||| ||||||||| | |||||| |||||| ||||| |
|
|
| T |
16958304 |
tatcccattcaattgataataaca-aagatattcaaagaattcttcttttctcaattttgctgatcaatctttattctagttagaatcatta |
16958394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 30036685 - 30036612
Alignment:
| Q |
133 |
aaagaaattttcttttctcaattttattgatcaatcatcattctaattagaaccattactttgtttattcattt |
206 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||||| | |||||| |||||| |||| | |||||||||||| |
|
|
| T |
30036685 |
aaagaattcttcttttctcaatttttttgatcaatctttattctatttagaatcattctctagtttattcattt |
30036612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University