View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_7 (Length: 578)
Name: NF18549_low_7
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 131 - 558
Target Start/End: Original strand, 10343388 - 10343804
Alignment:
| Q |
131 |
tagtactacttggtcctgcgcctacatcaacaacttcatttattatgggttggttcaacatagttgaaataacattattaccactattgttacaccatga |
230 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10343388 |
tagtactatttggtcctgcgcctacatcaacaacttcatttattatgcgttggttcaacatagttgaaataacattattaccactattgttacaccatga |
10343487 |
T |
|
| Q |
231 |
tgttgatgaaatcaaaaaagatatgttgttgacattgttgacatcttcttgacgagaatgaagagtaggaa---ttatgcatcttctgctagaggttcca |
327 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||| | ||||||||||| | |||| ||||||||||||||| || |
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| T |
10343488 |
tgttgatgaaatcaaaaaagacatgttgttgacat------------cttgacgaggacgaagagtaggaggagtcatgcgtcttctgctagaggt-ccg |
10343574 |
T |
|
| Q |
328 |
tcaccttgtgaaccttgactagaactatcccctataggtgatctgtttctcttgattgataaattatcatgccaatgataatccttcatattacaactag |
427 |
Q |
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| T |
10343575 |
tcgccttgcgaaccttgactagaactctctcatataggtgatatatatctcttgattgataagttatcatgccaatgataatccttcatagtacaactag |
10343674 |
T |
|
| Q |
428 |
tactagtagtagtggtggtgttaattccaccatctaaagacaaaactgaattacattactattgttttatgcaccagcctcagtttgtcctgcaacaggt |
527 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| ||| ||||||||| |
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| T |
10343675 |
tactagtagtagtggtggtgttaattccaccatctaaagacaaaactgaattacattactattgtttcatgcaccaacttcagtttatcc-gcaacaggt |
10343773 |
T |
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| Q |
528 |
gcatgaaacaattatatatatagggactaaa |
558 |
Q |
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| T |
10343774 |
gcatgaaacatttatatatatatggactaaa |
10343804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 10343204 - 10343341
Alignment:
| Q |
1 |
tttcatcaacataatggcggaacaatagtcgtaacagtgtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctgcaaatgcaggacc |
100 |
Q |
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|||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
10343204 |
tttcattaacataatgatggaacaatagtggtaacagtgtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctgcatgtgcaagacc |
10343303 |
T |
|
| Q |
101 |
aaataatactgcaacttagtctcaaatgaatagtacta |
138 |
Q |
| |
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|| || ||||| ||| ||||||||||||||||||||| |
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| T |
10343304 |
aagtagcactgcgactcagtctcaaatgaatagtacta |
10343341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 129 - 380
Target Start/End: Original strand, 10181507 - 10181758
Alignment:
| Q |
129 |
aatagtactacttggtcctgcgcctacatcaacaacttcatttattatgggttggttcaacatagttgaaataacattattaccactattgttacaccat |
228 |
Q |
| |
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||||||||||||||| ||||| |||||| ||||||||||||| || ||| ||||||| |||||||||||||| || ||||||| ||| || | |||| |
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| T |
10181507 |
aatagtactacttggacctgcacctacagcaacaacttcattcatcatgtgttggtttaacatagttgaaatgacgctattaccgatatagtacctccat |
10181606 |
T |
|
| Q |
229 |
gatgttgatgaaatcaaaaaagatatgttgttgacattgttgacatcttcttgacgagaatgaagagt---aggaattatgcatcttctgctagaggttc |
325 |
Q |
| |
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|| |||||||||| ||| |||| | ||||||||||||||| |||||||||| ||| ||| ||||| |||||||| || ||||||||||||||||| |
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| T |
10181607 |
gaagttgatgaaactaaagaagaca---tgttgacattgttgatatcttcttgatgaggatggagagtaggaggaattacgcgtcttctgctagaggttc |
10181703 |
T |
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| Q |
326 |
catcaccttgtgaaccttgactagaactatcccctataggtgatctgtttctctt |
380 |
Q |
| |
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||||| |||||||| ||||||||||||| || ||| | |||||||| ||||||| |
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| T |
10181704 |
catcagcttgtgaatcttgactagaactttctccttttggtgatctacttctctt |
10181758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 181 - 464
Target Start/End: Complemental strand, 10181372 - 10181092
Alignment:
| Q |
181 |
tggttcaacatagttgaaataacattattaccactattgttacaccatgatgttgatgaaatcaaaaaagatatgttgttgacattgttgacatcttctt |
280 |
Q |
| |
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|||||||| ||| ||||||| ||| |||||||| ||||||| | |||||| | |||||||| || ||||||||||| |||||||||||||||| | |
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| T |
10181372 |
tggttcaatataattgaaatgacactattaccaatattgttcctccatgaagatgatgaaactgaagaagatatgttg---acattgttgacatcttgat |
10181276 |
T |
|
| Q |
281 |
gacgagaatgaagagtaggaattatgcatcttctgctagaggttccatcaccttgtgaaccttgactagaactatcccctataggtgatctgtttctctt |
380 |
Q |
| |
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|| || | || | || ||||| |||||||| |||| ||||||| || ||||||| |||||||| |||| || ||| |||||||||| ||||||| |
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| T |
10181275 |
gaggatagagagtaagagaaattacacatcttcttctagtggttccaccagtttgtgaatcttgactataactttctcctttaggtgatctacttctctt |
10181176 |
T |
|
| Q |
381 |
gattgataaattatcatgccaatgataatccttcatattacaactagtactagtagtagtggtggtgttaattccaccatctaa |
464 |
Q |
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|||||||||||||||| |||| |||| ||| |||||| ||| ||||||| || || |||||||||||||| || ||| |||||| |
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| T |
10181175 |
gattgataaattatcaggccactgatcatcattcatagtactactagtagtattattagtggtggtgttagttgcactatctaa |
10181092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 387 - 494
Target Start/End: Original strand, 10182201 - 10182308
Alignment:
| Q |
387 |
taaattatcatgccaatgataatccttcatattacaactagtactagtagtagtggtggtgttaattccaccatctaaagacaaaactgaattacattac |
486 |
Q |
| |
|
|||||||||||||| | ||| ||||||||| | | |||| || || ||||||||||||||||||||| |||||||||| |||||| |||| ||||||| |
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| T |
10182201 |
taaattatcatgccgctaatattccttcatagtgctactactagtattagtagtggtggtgttaattctaccatctaaatacaaaatggaatgacattac |
10182300 |
T |
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| Q |
487 |
tattgttt |
494 |
Q |
| |
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|||||||| |
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| T |
10182301 |
tattgttt |
10182308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 447
Target Start/End: Complemental strand, 10343192 - 10343009
Alignment:
| Q |
265 |
ttgttgacatcttcttgacgagaatgaaga-gtaggaattatgcatcttctgctagaggttccatcaccttgtgaaccttgactagaactatcccctata |
363 |
Q |
| |
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||||||||||| |||||| ||| ||| ||| | ||||||| || ||||||||| ||| ||||| | ||||||||| || |||| |||| || ||| || |
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| T |
10343192 |
ttgttgacatcgtcttgatgaggatggagatgggggaattacgcttcttctgctggagattccactagcttgtgaacattaactataactctcacctcta |
10343093 |
T |
|
| Q |
364 |
ggtgatctgtttctcttgattgataaattatcatgccaatgataatccttcatattacaactagtactagtagtagtggtggtg |
447 |
Q |
| |
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||||||| ||||||| || ||||||||||||| || |||| || |||||| |||||||| ||||| ||||||| |||||| |
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|
| T |
10343092 |
agtgatctacttctcttaatcaataaattatcatgtcactgatcataattcatagtacaactactactaatagtagtagtggtg |
10343009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 10343309 - 10343203
Alignment:
| Q |
136 |
ctacttggtcctgcgcctacatcaacaacttcatttattatgggttggttcaacatagttgaaataacattattaccactattgttacaccatgatgttg |
235 |
Q |
| |
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|||||||||| ||| | | || ||||||||||| | || ||| |||||||| |||||| |||||| ||| | |||||||||||||| || ||| ||||| |
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| T |
10343309 |
ctacttggtcttgcacatgcagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgacactgttaccactattgttccatcattatgtta |
10343210 |
T |
|
| Q |
236 |
atgaaat |
242 |
Q |
| |
|
||||||| |
|
|
| T |
10343209 |
atgaaat |
10343203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 10343498 - 10343372
Alignment:
| Q |
1 |
tttcatcaacataatggcggaacaatagtcgtaacagtgtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctgcaaatgcaggacc |
100 |
Q |
| |
|
|||||||||||| |||| | ||||||||| |||| | ||| |||||| |||||| |||||||| ||| || | ||||||||||| || | |||||||| |
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| T |
10343498 |
tttcatcaacatcatggtgtaacaatagtggtaataatgttatttcaactatgttgaaccaacgcataataaatgaagttgttgatgtaggcgcaggacc |
10343399 |
T |
|
| Q |
101 |
aaataatactgcaacttagtctcaaat |
127 |
Q |
| |
|
||||| |||| | ||| ||||||||| |
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|
| T |
10343398 |
aaatagtactactactctgtctcaaat |
10343372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 10181581 - 10181533
Alignment:
| Q |
39 |
gtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctg |
87 |
Q |
| |
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||||||||| |||||| |||||||||||||||| |||||||||||||| |
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|
| T |
10181581 |
gtcatttcaactatgttaaaccaacacatgatgaatgaagttgttgctg |
10181533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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