View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18549_low_8 (Length: 523)

Name: NF18549_low_8
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18549_low_8
NF18549_low_8
[»] chr1 (1 HSPs)
chr1 (17-523)||(2568496-2568996)
[»] chr6 (2 HSPs)
chr6 (485-518)||(7465582-7465615)
chr6 (485-515)||(2424394-2424424)
[»] scaffold1444 (1 HSPs)
scaffold1444 (485-521)||(881-917)
[»] chr8 (2 HSPs)
chr8 (486-521)||(12954835-12954870)
chr8 (485-523)||(24733277-24733315)
[»] chr5 (1 HSPs)
chr5 (484-523)||(24231710-24231749)
[»] chr3 (2 HSPs)
chr3 (485-515)||(48180273-48180303)
chr3 (485-518)||(30082964-30082997)
[»] chr7 (1 HSPs)
chr7 (485-518)||(35923474-35923507)
[»] chr4 (3 HSPs)
chr4 (485-518)||(32692920-32692953)
chr4 (488-520)||(24369515-24369547)
chr4 (491-523)||(40252766-40252798)
[»] chr2 (2 HSPs)
chr2 (485-518)||(13811144-13811177)
chr2 (491-520)||(42924384-42924413)


Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 523
Target Start/End: Original strand, 2568496 - 2568996
Alignment:
Q  17 acaacaatcactaagtggtaatcaatgttcacaagccaaaggttgttgatgccttaaaccttcaccgtgagagtttggggtgagatgattatgtatatac 116  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2568496 acaacgatcactaagtggtaatcaatgttcacaaaccaaaggttgttgatgccttaaaccttcaccgtgagagtttggggtgagatgattatgtatatac 2568595  T
Q  117 catctcatcgcccactttgctctttcctggtaatatgctcaccatgtcgattaagaatcggtaaaatacacggtaagtgacaaacagattaaggaaatat 216  Q
    ||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  2568596 catctcatcacccactttgctctttcgtggaaatatgctcaccatgtcgattaagaatcggtaaaatatgcggtaagtgacaaacagattaaggaaatat 2568695  T
Q  217 atgaattcctctatcattgaatcagagagttagttcttgtgttctataactaattaagaaagttatataaactatcattatagtttttgatacgtataag 316  Q
    ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||    
T  2568696 atgaatttctctatcattgaatcacagagttaattcttgtgttctataactaattaagaaagttataaaaactatcgttatagtttttgatatgtataag 2568795  T
Q  317 agttttaatcctaatcctaacatataacctaatgaaatcaaagttgaatgtacgatctcgaaagataaattttacagacatttatctgttgttgtgaccg 416  Q
    |||||      |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2568796 agttt------taatcctaacatataacctaatgaaatcaaagttgaatgtacaatctcgaaagataaattttacagacatttatctgttgttgtgaccg 2568889  T
Q  417 gaaagcctatcgacttgggaagggaggcaaccacagatcttggagtagtttttgcaacataagcgtggttaaagagtgtcccggagacactcgttaacat 516  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  2568890 gaatgcctatcgacatgggaagggaggcaaccacagatcttggagtagtttttgcaacataagtgtggttaaagagtgtcccggaggcactcgttaacat 2568989  T
Q  517 tttcctt 523  Q
    || ||||    
T  2568990 ttccctt 2568996  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 485 - 518
Target Start/End: Original strand, 7465582 - 7465615
Alignment:
Q  485 ttaaagagtgtcccggagacactcgttaacattt 518  Q
    ||||||||||||||||||||||||||||||||||    
T  7465582 ttaaagagtgtcccggagacactcgttaacattt 7465615  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 515
Target Start/End: Original strand, 2424394 - 2424424
Alignment:
Q  485 ttaaagagtgtcccggagacactcgttaaca 515  Q
    |||||||||||||||||||||||||||||||    
T  2424394 ttaaagagtgtcccggagacactcgttaaca 2424424  T

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Target: scaffold1444 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 917 - 881
Alignment:
Q  485 ttaaagagtgtcccggagacactcgttaacattttcc 521  Q
    |||||||||| ||||||||||||||||||||||||||    
T  917 ttaaagagtgccccggagacactcgttaacattttcc 881  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 521
Target Start/End: Original strand, 12954835 - 12954870
Alignment:
Q  486 taaagagtgtcccggagacactcgttaacattttcc 521  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12954835 taaagagtgtctcggagacactcgttaacattttcc 12954870  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 523
Target Start/End: Original strand, 24733277 - 24733315
Alignment:
Q  485 ttaaagagtgtcccggagacactcgttaacattttcctt 523  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  24733277 ttaaagagtgccccggagacactcgttaacatttccctt 24733315  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 523
Target Start/End: Complemental strand, 24231749 - 24231710
Alignment:
Q  484 gttaaagagtgtcccggagacactcgttaacattttcctt 523  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  24231749 gttaaagagtgttccggaggcactcgttaacattttcctt 24231710  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 515
Target Start/End: Original strand, 48180273 - 48180303
Alignment:
Q  485 ttaaagagtgtcccggagacactcgttaaca 515  Q
    |||||||||||||||||||||||||||||||    
T  48180273 ttaaagagtgtcccggagacactcgttaaca 48180303  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 518
Target Start/End: Original strand, 30082964 - 30082997
Alignment:
Q  485 ttaaagagtgtcccggagacactcgttaacattt 518  Q
    ||||||||||||||| ||||||||||||||||||    
T  30082964 ttaaagagtgtcccgaagacactcgttaacattt 30082997  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 518
Target Start/End: Complemental strand, 35923507 - 35923474
Alignment:
Q  485 ttaaagagtgtcccggagacactcgttaacattt 518  Q
    ||||||||||| ||||||||||||||||||||||    
T  35923507 ttaaagagtgttccggagacactcgttaacattt 35923474  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 518
Target Start/End: Complemental strand, 32692953 - 32692920
Alignment:
Q  485 ttaaagagtgtcccggagacactcgttaacattt 518  Q
    |||||||||||||||||| |||||||||||||||    
T  32692953 ttaaagagtgtcccggaggcactcgttaacattt 32692920  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 488 - 520
Target Start/End: Original strand, 24369515 - 24369547
Alignment:
Q  488 aagagtgtcccggagacactcgttaacattttc 520  Q
    |||| ||||||||||||||||||||||||||||    
T  24369515 aagattgtcccggagacactcgttaacattttc 24369547  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 491 - 523
Target Start/End: Original strand, 40252766 - 40252798
Alignment:
Q  491 agtgtcccggagacactcgttaacattttcctt 523  Q
    |||| ||||||||||||||||||||||||||||    
T  40252766 agtgccccggagacactcgttaacattttcctt 40252798  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 518
Target Start/End: Original strand, 13811144 - 13811177
Alignment:
Q  485 ttaaagagtgtcccggagacactcgttaacattt 518  Q
    ||||||||||||||||||||||| ||||||||||    
T  13811144 ttaaagagtgtcccggagacactggttaacattt 13811177  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 520
Target Start/End: Complemental strand, 42924413 - 42924384
Alignment:
Q  491 agtgtcccggagacactcgttaacattttc 520  Q
    ||||||||||||||||||||||||||||||    
T  42924413 agtgtcccggagacactcgttaacattttc 42924384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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