View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18549_low_9 (Length: 490)
Name: NF18549_low_9
Description: NF18549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18549_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 44854119 - 44853698
Alignment:
| Q |
1 |
aacacatacaccatatttgttatgggtgtatatgattgtgactttgtagtgagttgaaagagaatgagaggaaaaattggtctcactctcaccatatttt |
100 |
Q |
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| T |
44854119 |
aacacatacaccatatttgttatgggtgtatatgattgtgactttgtagtgagttgaaagagaatgagaggaaaaattggtctcactctcaccatatttt |
44854020 |
T |
|
| Q |
101 |
ttctgccacatggtcttccctatggacatgagaggtgcttttccacgaggaagagattgtttgaaaatgagatcaaacttagttattaagtatgaggacc |
200 |
Q |
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| T |
44854019 |
ttctgccacatggtcttccctatggacatgagaggtgcttt-ccacgaggaagagattgtttgaaaatgagatcaaacttagttgttaagtatgaggacc |
44853921 |
T |
|
| Q |
201 |
atggaataggtttttccttgctaatagagctttgaagctcacattttctaaatacatcaatggaggacaatggaaaatggactgtgagagaaaattttat |
300 |
Q |
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| T |
44853920 |
atggaataggtttttccttgctaatagagctttgaagctcacattttctaaatacatcaatggaggacaatggaaaatggactgtgagagaaaaaattat |
44853821 |
T |
|
| Q |
301 |
ataagtattttggtgtaaatggctaagaatgaaatca--atgtctacaaaatccaatgaacataaaatctggtccgacataaattacacgaatcaattcg |
398 |
Q |
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| T |
44853820 |
ataagtattttggtgtaaatggccaagaatgaaatcaatatgtctacaaaatccaaggaacataaaatctggtccgtcataaattacacgattcaattcg |
44853721 |
T |
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| Q |
399 |
ttactattgccgtcaccattact |
421 |
Q |
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| T |
44853720 |
ttacctttgacgtcaccattact |
44853698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 423 - 457
Target Start/End: Complemental strand, 44853676 - 44853642
Alignment:
| Q |
423 |
gtatagaaatagaacttaaatgagcttatttcaaa |
457 |
Q |
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| T |
44853676 |
gtatagaaatagaacttaaattagcttatttcaaa |
44853642 |
T |
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