View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_high_102 (Length: 214)
Name: NF1854_high_102
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_102 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 50 - 180
Target Start/End: Original strand, 37129296 - 37129426
Alignment:
| Q |
50 |
tgccaaaaacgtcatctcatatttatatttcaaaaaccatattcctaatccaatctctctatctatatctctcaagatgtgaaaaattcttgataaatcg |
149 |
Q |
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| T |
37129296 |
tgccaaaaacgtcatatcatatttatatttcaaaaaccatattcctaatcctatctctctatctatatctctcaagatgtgaaaaattcttgataaatcg |
37129395 |
T |
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| Q |
150 |
ttggattaggaattttgcacaaggtatttca |
180 |
Q |
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| T |
37129396 |
ttggattaggaattttgcacaaggtatttca |
37129426 |
T |
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Target: chr3; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 52 - 193
Target Start/End: Original strand, 37121182 - 37121317
Alignment:
| Q |
52 |
ccaaaaacgtcatctcatatttatatttcaaaaaccatattcctaatccaatctctctatctatatctctcaagatgtgaaaaattcttgataaatcgtt |
151 |
Q |
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| T |
37121182 |
ccaaaaacgccatctcatatttattttttaaaaaccatttttgtaatccaatctctctacct------ctcaaggtgtgaaaaattcttgaaaaatcgtt |
37121275 |
T |
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| Q |
152 |
ggattaggaattttgcacaaggtatttcattaacattccatt |
193 |
Q |
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| T |
37121276 |
gaattagaaattttgcataaggtatttcattaacattccatt |
37121317 |
T |
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