View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1854_high_19 (Length: 457)
Name: NF1854_high_19
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 36684472 - 36684920
Alignment:
| Q |
1 |
caccccaatggcgttgtctatagcaaaacagtcggttgtgtcccggagttcttctaaccatattgttgaagtcaatcttcccaacaaaacagagatctgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36684472 |
caccccaatggcgttgtctatagcaaaacagtcggttgtgtcccggagttcttctaaccatattgttgaagtcaatcttcccaacaaaatagagatctgt |
36684571 |
T |
|
| Q |
101 |
gaattccaaccataacaaattaagttatatatgtcaatcatttctatggattgtaagcaatacaaatatgctatttagatagagtcaacaaggtaatgag |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36684572 |
ggattccaaccataacaaattaagttatatatgtcaatcatttctatggattgtaagcaatacaaatatgctatttagatagagtcaacaaggtaatgag |
36684671 |
T |
|
| Q |
201 |
atgaagggtaacacttttttatacaacccaaatcctttaccacaatttcattgggaagctagatggctttggactgttcgattaagagagaaatttttta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36684672 |
atgaagggtaacacttttttatacaacccaaatcctttaccacaatttcattgggaagctagatggctttggactgttcgattaagagagaaaattttta |
36684771 |
T |
|
| Q |
301 |
agattatgagagatcctctataatctaacggggtcttctgcatcgtaaagccaaatgtagagaatttaatttgtgttttatagacttttttaaatcttct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36684772 |
agattatgagagatcctctataatctaacggggtcttctgcatcgtaaagccaaatgtagagaatttaatttgtgttttatagacttttttaaatcttct |
36684871 |
T |
|
| Q |
401 |
tttaatatcgatctaaaccatcacggctcattaagttagtccctttgct |
449 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36684872 |
tttaatatcgatctaaactatcacggctcattaagttagtccctttgct |
36684920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 36676800 - 36676868
Alignment:
| Q |
2 |
accccaatggcgttgtctatagcaaaacagtcggttgtgtcccggagttcttctaaccatattgttgaa |
70 |
Q |
| |
|
||||||||||| ||||| | ||||||||| ||||||| ||| || |||||||| ||||||||||||||| |
|
|
| T |
36676800 |
accccaatggcattgtccacagcaaaacaatcggttgcgtcacgcagttcttccaaccatattgttgaa |
36676868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University