View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_high_2 (Length: 667)
Name: NF1854_high_2
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 7 - 667
Target Start/End: Complemental strand, 46667466 - 46666806
Alignment:
| Q |
7 |
aataccaaagtcacatttgataaggaacttaatgtggcgttaaagagcgaagtaataagaagatcaatgacttgatttccacacac-aacataataagaa |
105 |
Q |
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| T |
46667466 |
aataccaaagtcacatttgataaggaacttaatgtggcgttaaagagtgaagtaataagaagatcaatgacttgatttccacactctaacataataagaa |
46667367 |
T |
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| Q |
106 |
taaattaacaattaataatattaacattgataggaaaaaagatgtagaaatctatcacaatgaatggagacttaattagagtttttaacttacaatttat |
205 |
Q |
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| T |
46667366 |
taaattaacaattaataatattaacattgataggaaaaaagatgtagaaatctatcacaatgaatggagacttaattagagtttttaacttacaatttat |
46667267 |
T |
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| Q |
206 |
cttggcttctggtggtgtatttgggtggaagatactaagtgatctaacgaagtcatcaaaataaatctttcctttcttcttgacatcaaatagatcaaac |
305 |
Q |
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| T |
46667266 |
cttggcttctggtggtgtatttggggggaagatactaagtgatctaacgaagtcatcaaaataaatctttcctttcttcttgacatcaaatagatcaaag |
46667167 |
T |
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| Q |
306 |
atctgcacgtttcaatattttgtattaatagatatatatagtcaatttaattaaaaggttagttcacaatatgaatgacataaaaaataatagtatagtt |
405 |
Q |
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| T |
46667166 |
atctgcacgtttcaatattttgtattaatagatagatatagtcaatttaattaaaaggttagttcacaatatgaatgacataaaaaataatagtatagtt |
46667067 |
T |
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| Q |
406 |
attattaagaaagcaagagtatagtacccgatctgccattatatgttgcttttcactattgttgaataatgctgatttaaattcttcctacaaatnnnnn |
505 |
Q |
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| T |
46667066 |
attattaagaaagcaagagtatagtacccgatctgccattatatgttgcttttcactattgttgaataatgctgatttaaattcttcctacaaat-aaaa |
46666968 |
T |
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| Q |
506 |
nncacacataatcgccttaattaagggctacaagttccatgtgatcgaagaaaaaacacgcataatattctaacaatcaaaccaaaatgttaacagctta |
605 |
Q |
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| T |
46666967 |
aacacacataatcgcattaattaagggctacaagttccatgtgatcgaagaaaaaacaagcataatattctaacaatcaaaccaaaatgttaacagctta |
46666868 |
T |
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| Q |
606 |
tctatacaatataatttgtagaaaaagactatgcagaaattaaatgtatagtagtaacttgc |
667 |
Q |
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| T |
46666867 |
tatatacaatataatttgtagaaaaagcctatgcagaaattaaatgtatagtagtaccttgc |
46666806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 225 - 315
Target Start/End: Original strand, 41110882 - 41110972
Alignment:
| Q |
225 |
tttgggtggaagatactaagtgatctaacgaagtcatcaaaataaatctttcctttcttcttgacatcaaatagatcaaacatctgcacgt |
315 |
Q |
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| T |
41110882 |
tttgggtggaagacattgagagatctaacgaagtcatcaaaatcaataacgcccttcctcttgacatcaaatagatcaaagatctgcacgt |
41110972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 4329321 - 4329271
Alignment:
| Q |
187 |
tttttaacttacaatttatcttggcttctggtggtgtatttgggtggaaga |
237 |
Q |
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| T |
4329321 |
tttttaacttacaatctatcttgacttcttgtggtgcattagggtggaaga |
4329271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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