View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_high_20 (Length: 443)
Name: NF1854_high_20
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Original strand, 41127143 - 41127569
Alignment:
| Q |
11 |
aagaatcaaagtagaagatcgaggaagcttagggcgtggcattggtgtgaatatcttgtgtaaaagtgagttgttaagacgttccagttgataattaaat |
110 |
Q |
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| T |
41127143 |
aagaatcaaa-tagaagatcgaggaagcttaggccgtggcattggtgtgaatatcttgtgtaaaagtgagttgttaagacgttccagttgataattaaat |
41127241 |
T |
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| Q |
111 |
cactcttacgatacattaccagtt----ggtaacaaatgacttttcttcccctatcagttctaagtttgttgaatccataccatgaaatagtataacatt |
206 |
Q |
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| T |
41127242 |
cactcttacgatactcttcaatttatttggtaacaaatgacttttcttcccctatcagttctaagtttgttgaatccataccatgaaatagtataacatt |
41127341 |
T |
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| Q |
207 |
ggcatgcattaccataatgtgttgttttaccaacattaagacaatatgttatatgt------ttatgagtagattaattgtacatttgaattatcatact |
300 |
Q |
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| T |
41127342 |
ggcatgcattaccataatgtgttgttttaccaacattaagacaatatgttatatgtatatgtttatgagtagattaattgtacatttgaattatcatact |
41127441 |
T |
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| Q |
301 |
ctactcattttacaattttgatcataaggaatcttgttcatttgtttttg-atgtgattgcttgcatatcaattgtgtgagtagatggtgaattggtagg |
399 |
Q |
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| T |
41127442 |
ctactcattttacaattttga-cataaggactcttgttcatttgtttttttatgtgattgcttgcatatcaattgtgtgagtagatggtgaattggtagg |
41127540 |
T |
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| Q |
400 |
ataatgaaattgaagagtgagttgcatgt |
428 |
Q |
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| T |
41127541 |
agaatgaaattgaagagtgagttgcatgt |
41127569 |
T |
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