View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_high_24 (Length: 424)
Name: NF1854_high_24
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 3804561 - 3804155
Alignment:
| Q |
1 |
agaactagatttacggatacacactagtcaatgttttgcctgcattgtttggatgtcaaagaaaacttaaaatcctacatttaggataatgtttcatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3804561 |
agaactagatttacggatacacactagtcaatgttttgcctgcattgtttggatgtcaaagaaaacttaaaatcctacatttaggataatgtttcatgaa |
3804462 |
T |
|
| Q |
101 |
aattttccttcatgtttaagaatctgataagactacagtatctagacatttgatgttgccataaactgaaaactctgtcagagcttcctcaatctcttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3804461 |
aattttccttcatgtttaagaatctgataagactacagtatctagacatttgatgttgccataaactgaaaactctgtcagagcttcctcaatctcttga |
3804362 |
T |
|
| Q |
201 |
aattatacttacttgcgcaagggtgcacattactagaaactgggttgttcccttcaatttctgaacaatgcaaggagaacaggaaaagggttgtgtttgc |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3804361 |
aattatacttacttgcgcaagggtgcacattactagaaactgggttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgc |
3804262 |
T |
|
| Q |
301 |
gaattgcttaaaattggacgaataatctccctcgaatactgtatttaatgcgcaaagaaacattctgaaatttgcataccaacatgtatcacattgactc |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3804261 |
gaattgcttaaaattggatgaataatctccctcgaatactgtatttaatgcgcaaagaaacattctgaaatttgcataccaacatgtatcacattgactc |
3804162 |
T |
|
| Q |
401 |
ttatcaa |
407 |
Q |
| |
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||||||| |
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| T |
3804161 |
ttatcaa |
3804155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 3948414 - 3948774
Alignment:
| Q |
16 |
gatacacactagtcaatgttttgcctgcattgtttggatgtcaaagaaaacttaaaatcctacatttaggataatgtttcatgaaaattttccttcatgt |
115 |
Q |
| |
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||||||||| ||| ||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
3948414 |
gatacacacaagttaatgtaatgcctgcattgtttggatgtcaaagaaagcttgaaaccctacatttaggatactgtttcatgaaaattttcctttatgt |
3948513 |
T |
|
| Q |
116 |
tt-aagaatctgata--agactacagtatctagacatttgatgttgccataaactgaaaactctgtcagagcttcctcaatctcttgaaattatacttac |
212 |
Q |
| |
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|| |||||| ||||| || ||||| ||||||| ||| ||||||||||||||||| ||| |||| |||| || |||||||||||||||||| ||||| |
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| T |
3948514 |
tttaagaatatgatataaggctacaatatctagccataagatgttgccataaactgcaaagtctgccagacctacctcaatctcttgaaattctactt-- |
3948611 |
T |
|
| Q |
213 |
ttgcgcaagggtgcacattactagaaactgggttgttcccttcaatttctgaacaatgcaaggagaacaggaaaagggttgtgtttgcgaattgcttaaa |
312 |
Q |
| |
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||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
3948612 |
----------gtgaaca-----agaaaa-gggttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaa |
3948695 |
T |
|
| Q |
313 |
attggacgaataatctccctcgaatactgtatttaatgcgcaaagaaacattctgaaatttgcataccaacatgtatca |
391 |
Q |
| |
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|||||| ||| | |||| | |||||| ||| |||||| ||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
3948696 |
attggatgaacattctctcgcgaatattgtgtttaatttgcaaataaacattctgaaatttgcataccaacatttatca |
3948774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 36 - 391
Target Start/End: Complemental strand, 4016877 - 4016524
Alignment:
| Q |
36 |
ttgcctgcattgtttggatgtcaaagaaaacttaaaatcctacatttaggataatgtttcat-gaaaattttccttcatgttt-aagaatctgataagac |
133 |
Q |
| |
|
|||||||||| |||||||||||||| || ||| ||||||||||||||||| | |||| ||| |||||||||||||||||||| |||||||| |||| || |
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| T |
4016877 |
ttgcctgcatcatttggatgtcaaagcaagcttgaaatcctacatttaggaaattgttccattgaaaattttccttcatgttttaagaatctaataaaac |
4016778 |
T |
|
| Q |
134 |
tacagtatctagacatttgatgttgccataaactgaaaactctgtcagagcttcctcaatctcttgaaattatacttacttgcgcaagggtgcacattac |
233 |
Q |
| |
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|||| |||||||| | ||| ||| || |||||| ||| ||| ||| |||||||| ||||||||||||| |||| ||||||| ||||||| || |
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| T |
4016777 |
tacaatatctagaggtaagatattgtcagaaactgcaaaatctaccagtgcttcctccatctcttgaaattctactc----gcgcaagagtgcacagcac |
4016682 |
T |
|
| Q |
234 |
tagaaactgggttgttcccttcaatttctgaacaatgcaaggagaacaggaaaagggttgtgtttgcgaattgcttaaaattggacgaataatctccctc |
333 |
Q |
| |
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| | |||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | || | | | |
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| T |
4016681 |
tgaagactgtgttgttcccttcaattgctgaacaattcaaggagaacaggaaaagggttgtgtttgcgaattgcttgaaattggacgagcattcactcgc |
4016582 |
T |
|
| Q |
334 |
gaatactgtatttaatgcgcaaagaaacattctgaaatttgcataccaacatgtatca |
391 |
Q |
| |
|
|||| ||| |||||||| |||| ||||||| |||||||||||||||||||||||| |
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|
| T |
4016581 |
aaatattgtgtttaatgctcaaataaacattaccaaatttgcataccaacatgtatca |
4016524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 17 - 391
Target Start/End: Original strand, 3965417 - 3965789
Alignment:
| Q |
17 |
atacacactagtcaatgttttgcctgcattgtttggatgtcaaagaaaacttaaaatcctacatttaggataatgtttcat-gaaaattttccttcatgt |
115 |
Q |
| |
|
|||||||| | |||||| |||||||||| |||||| |||||| || ||| ||||||||||||||||| | |||| ||| |||| |||||||||||| |
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| T |
3965417 |
atacacacaaatcaatgcattgcctgcatcatttggacgtcaaaccaagcttgaaatcctacatttaggaaactgttccattgaaagatttccttcatgt |
3965516 |
T |
|
| Q |
116 |
tt-aagaatctgataagactacagtatctagacatttgatgttgccataaactgaaaactctgtcagagcttcctcaatctcttgaaattatacttactt |
214 |
Q |
| |
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|| |||||| |||||||||| || ||||||||||| ||| ||||| ||| ||| ||||||| ||||||||||||||||||||||| || ||| || |
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|
| T |
3965517 |
tttaagaatttgataagactgcaatatctagacataagatattgccttaagctgcaaactctaccagagcttcctcaatctcttgaagttctac--ac-- |
3965612 |
T |
|
| Q |
215 |
gcgcaagggtgcacattactagaaactgggttgttcccttcaatttctgaacaatgcaaggagaacaggaaaagggttgtgtttgcgaattgcttaaaat |
314 |
Q |
| |
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|||| ||| ||||||| |||||| | || |||||||||||||||| ||||||||| ||||||||||||| | |||||||| || ||||||||||| |||| |
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|
| T |
3965613 |
gcgcgaggatgcacatcactagagagtgtgttgttcccttcaattcctgaacaattcaaggagaacaggtatagggttgtattcgcgaattgcttgaaat |
3965712 |
T |
|
| Q |
315 |
tggacgaataatctccctcgaatactgtatttaatgcgcaaagaaacattctgaaatttgcataccaacatgtatca |
391 |
Q |
| |
|
|||| ||| | |||| | |||| || ||||||||||||| ||||| | |||||||||||| ||||||||||||| |
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|
| T |
3965713 |
tggatgaacattctcttgcaaatattgcgtttaatgcgcaaataaacaatatgaaatttgcatgccaacatgtatca |
3965789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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