View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1854_high_3 (Length: 647)
Name: NF1854_high_3
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 588; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 17 - 642
Target Start/End: Complemental strand, 54721706 - 54721085
Alignment:
| Q |
17 |
aaatggttgacatgcatgcatcaaaccacaaattactcgagaatccggcaataaaatacatgatatcatcacacatacacacatttatttgatacatata |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54721706 |
aaatggttgacatgcgtgcatcaaaccacaaattactcgagaatccggcaataaaataca-gatatcatcacacatacacacatttatttgatacatata |
54721608 |
T |
|
| Q |
117 |
tagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatggattcggtat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721607 |
tagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatggattcggtat |
54721508 |
T |
|
| Q |
217 |
gtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaatgatgaaaataagttttattat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721507 |
gtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaatgatgaaaataagttttattat |
54721408 |
T |
|
| Q |
317 |
tatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgattaactcttccatcaccctcctca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
54721407 |
tatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgattaactcttccatcac---cctca |
54721311 |
T |
|
| Q |
417 |
gcagcagaactattcagagtaccagcttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgcca |
516 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54721310 |
gcagcagcactattcagagtaccaacttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgcca |
54721211 |
T |
|
| Q |
517 |
cagcaaggacaagtagaacaagtgaaacagtactggtttttgccatagtgtacaatatctatcagtaactttatttccttcctatcgttattgttttgca |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54721210 |
cagcaaggacaagtagaacaagtgaaacagtactggtttttgccatagtgtacaatatctatcagtaactttatttccttcctatcgttattgttttgca |
54721111 |
T |
|
| Q |
617 |
tggaataaaataggcttcatctcact |
642 |
Q |
| |
|
|||||||||||||||||||| ||||| |
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|
| T |
54721110 |
tggaataaaataggcttcatatcact |
54721085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 345 - 642
Target Start/End: Complemental strand, 54714450 - 54714165
Alignment:
| Q |
345 |
tcatcatcatcatgaagctgatcagcttca---tctttcactagtaattgattaactcttccatcaccctcctcagcagcagaactattcagagtaccag |
441 |
Q |
| |
|
||||||||||||| | |||||||||||||| |||||||| || ||||||||||||||||||||| | |||||||| ||||||||| |||||| |
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|
| T |
54714450 |
tcatcatcatcatcatgctgatcagcttcaatatctttcaccggt---tgattaactcttccatcacccccggcagcagca---ctattcagaataccag |
54714357 |
T |
|
| Q |
442 |
cttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagtga |
541 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||| || ||| |
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|
| T |
54714356 |
cttcatctttcaccagttgattagctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggacaactagaagaattga |
54714257 |
T |
|
| Q |
542 |
aacagtactggtttttgccatagtgtacaatatctatcagtaactttatttccttcctatcgttattgttttgcatggaataaaataggcttcatctcac |
641 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
54714256 |
a---------gtttttgccatagtgtacaatatcactcagtatttttattttcttcctatcgttattgttttgcatggaataaaataggcttcatatcac |
54714166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 54714664 - 54714572
Alignment:
| Q |
116 |
atagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatgga |
208 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54714664 |
atagatagatataaataacacacaaaccatggccgcaatctctgatcatggaaggatttcagcgttagggttaccgcttttagccacaatgga |
54714572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 440 - 574
Target Start/End: Complemental strand, 54728205 - 54728077
Alignment:
| Q |
440 |
agcttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagt |
539 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| | ||||| ||||| ||||||||||||||| || ||||||||| |||||||||| ||||||||| |
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|
| T |
54728205 |
agcttcatctttctccagttgattatctcttcccacacccgcagcaa---cactatagccattcacaaa-aatgccacaacaaggacaagcagaacaagt |
54728110 |
T |
|
| Q |
540 |
gaaacagtactggtttttgccatagtgtacaatat |
574 |
Q |
| |
|
||| ||||| | |||||| |||||||| |||||| |
|
|
| T |
54728109 |
gaagcagta--gttttttgtcatagtgtgcaatat |
54728077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 54714781 - 54714731
Alignment:
| Q |
18 |
aatggttgacatgcatgcatcaaacc-acaaattactcgagaatccggcaa |
67 |
Q |
| |
|
||||||||||||||| |||||||||| |||||| ||||||||||||||||| |
|
|
| T |
54714781 |
aatggttgacatgcacgcatcaaaccaacaaatcactcgagaatccggcaa |
54714731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 17 - 570
Target Start/End: Complemental strand, 5297859 - 5297310
Alignment:
| Q |
17 |
aaatggttgacatgcatgcatcaaaccacaaattactcgagaatccggcaataaaatacatgatatcatcacacatacacacatttatttgatacatata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297859 |
aaatggttgacatgcatgcatcaaaccacaaattactcgagaatccggcaataaagtaca-gatatcatcacacatacacacatttatttgatacatata |
5297761 |
T |
|
| Q |
117 |
tagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatggattcggtat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297760 |
tagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatggattcggtat |
5297661 |
T |
|
| Q |
217 |
gtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaatgatgaaaataagttttattat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297660 |
gtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaatgatgaaaataagttttattat |
5297561 |
T |
|
| Q |
317 |
tatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgattaactcttccatcaccctcctca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5297560 |
tatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgattaactcttccatcac---cctca |
5297464 |
T |
|
| Q |
417 |
gcagcagaactattcagagtaccagcttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgcca |
516 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297463 |
gcagcagcactattcagagtaccagattcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgcca |
5297364 |
T |
|
| Q |
517 |
cagcaaggacaagtagaacaagtgaaacagtactggtttttgccatagtgtaca |
570 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297363 |
cagcaaggacaactagaacaagtgaaacagtactggtttttgccatagtgtaca |
5297310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 440 - 574
Target Start/End: Complemental strand, 5302868 - 5302739
Alignment:
| Q |
440 |
agcttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagt |
539 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| | ||||| |||||| ||||||||||||||| || |||||||||| |||||||||| ||||||||| |
|
|
| T |
5302868 |
agcttcatctttctccagttgattatctcttcccacacccacagcag---cactatagccattcacaaataatgccacaacaaggacaagcagaacaagt |
5302772 |
T |
|
| Q |
540 |
gaaacagtactggtttttgccatagtgtacaatat |
574 |
Q |
| |
|
||| ||||| | |||||| |||||||| |||||| |
|
|
| T |
5302771 |
gaagcagta--gttttttgtcatagtgtgcaatat |
5302739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 5398892 - 5398845
Alignment:
| Q |
129 |
aataacacacaaaccatggccgcaatctctgatcaaggaaggatttca |
176 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
5398892 |
aataacacacaaaccatggccacaatctctcatcatggaaggatttca |
5398845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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