View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1854_high_30 (Length: 403)
Name: NF1854_high_30
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 5685026 - 5685404
Alignment:
| Q |
19 |
ggaattgcctggtccgatgagggagagagtttatgggttgattgggaaggagaatttgcctaaatggattaaagctgccagtttacagaatttgatattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5685026 |
ggaattgcctggtccgatgagggagagagtttatgggttgattgggaaggagaatttgcctaaatggattaaagctgccagtttacagaatttgatattt |
5685125 |
T |
|
| Q |
119 |
ccttatgataatatggataagattgtgaggagggatagagaaggacctgtcaagtaagttataattttacttcaatgttcgcgtaggttataattttgat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5685126 |
ccttatgataatatggataagattgtgaggagggatagagaaggacctgtcaagtaagttataattttacttcaatgttcgcgtaggttataattttgat |
5685225 |
T |
|
| Q |
219 |
attatgttggtataagttcttattgtatgtaatgtaaaatttcatgtacttacaaattacaatagattttgataactatgcacttacaccgccgttcaat |
318 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5685226 |
attatgttggtgtaagttcttattgcatgtaatgtaaaatttcatgtacttacaaattacaatagattttgataactatgcacttacaccgccgttcaat |
5685325 |
T |
|
| Q |
319 |
caaattttactatgtaggtatttgttgagatattttaataaacgatatcactttaccgagttagctatattcttctcac |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5685326 |
caaattttactatgtaggtatttgttgagatattttaataaacgatatcactttaccgagttagctatattcttctcac |
5685404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University