View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_high_32 (Length: 397)
Name: NF1854_high_32
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 124 - 384
Target Start/End: Complemental strand, 1174491 - 1174231
Alignment:
| Q |
124 |
actcaaatatacatggattgttcctacttacataagactcacttaaactagtaagtgtcgccctatttaggcggttgattacttcgatatctggattaac |
223 |
Q |
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| T |
1174491 |
actcaaatatacatggattgttcctacttacataagactcacttaaactagtaagtgtcgccctatttaggcggttggttacttcgatatctggattaac |
1174392 |
T |
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| Q |
224 |
ctcataacaactagagtgaagctaaggagaaaaattgcaatcaacaagaaacctatcatcagatcaaatactataaatagtcgttttgacccacatgtat |
323 |
Q |
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| T |
1174391 |
ctcataacaactagagtaaagctaaggagaaatattgcaatcaacaaggaacctatcatcagatcaactactataaatagtcggtttcacccacatgtat |
1174292 |
T |
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| Q |
324 |
gatgagatgagttcacattttttcacttttaccacaactatactcatataccaagtatgtg |
384 |
Q |
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| T |
1174291 |
gatgagatgagttcacattttttcacttttactacaactatactcatataccaagtatgtg |
1174231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 1192216 - 1192118
Alignment:
| Q |
14 |
atcaaagtaaagttacatacatttgttttataaattaaattgtagttgatattgcggagaa-ttgtgactggagtgctcaattgcagatgtattatgat |
111 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||| |||||||||||||| |
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| T |
1192216 |
atcaaagtaaagttacatacattagttttataaattaaattgtagttgatatcggggagaatttgtgactggcatgctcaattgtagatgtattatgat |
1192118 |
T |
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