View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1854_high_36 (Length: 390)

Name: NF1854_high_36
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1854_high_36
NF1854_high_36
[»] chr4 (27 HSPs)
chr4 (19-390)||(20770632-20771002)
chr4 (297-390)||(37109336-37109429)
chr4 (106-174)||(20770593-20770661)
chr4 (310-390)||(2185017-2185097)
chr4 (302-390)||(7292783-7292871)
chr4 (314-390)||(38869783-38869859)
chr4 (298-390)||(46545710-46545802)
chr4 (299-390)||(7949439-7949530)
chr4 (299-390)||(51250507-51250598)
chr4 (43-97)||(23972909-23972963)
chr4 (299-380)||(21660139-21660220)
chr4 (299-380)||(21668903-21668984)
chr4 (323-384)||(31802037-31802098)
chr4 (321-390)||(44194969-44195038)
chr4 (346-390)||(10048027-10048071)
chr4 (298-390)||(28635695-28635787)
chr4 (343-390)||(4249221-4249268)
chr4 (343-390)||(23378000-23378047)
chr4 (343-390)||(29195139-29195185)
chr4 (343-390)||(51622529-51622576)
chr4 (346-380)||(7539637-7539671)
chr4 (343-377)||(32992656-32992690)
chr4 (343-380)||(8030199-8030236)
chr4 (47-92)||(9609818-9609863)
chr4 (298-375)||(31826608-31826685)
chr4 (346-390)||(21404806-21404850)
chr4 (343-379)||(49576890-49576926)
[»] chr1 (29 HSPs)
chr1 (301-390)||(33700758-33700847)
chr1 (299-390)||(36371470-36371561)
chr1 (299-390)||(8904414-8904505)
chr1 (311-390)||(2799874-2799953)
chr1 (299-390)||(4566548-4566639)
chr1 (299-390)||(8177167-8177258)
chr1 (299-390)||(51814494-51814585)
chr1 (298-390)||(9165180-9165272)
chr1 (297-381)||(51703777-51703861)
chr1 (303-390)||(1247117-1247204)
chr1 (310-390)||(35699963-35700045)
chr1 (297-390)||(17745241-17745334)
chr1 (299-376)||(40257399-40257476)
chr1 (298-374)||(7743326-7743402)
chr1 (302-378)||(15786317-15786393)
chr1 (321-377)||(52029935-52029991)
chr1 (343-390)||(3265968-3266015)
chr1 (45-92)||(18249886-18249933)
chr1 (299-390)||(21547465-21547556)
chr1 (343-390)||(31605833-31605880)
chr1 (299-390)||(37400274-37400365)
chr1 (297-379)||(50901579-50901662)
chr1 (38-92)||(89935-89989)
chr1 (299-377)||(19528325-19528403)
chr1 (316-377)||(48615341-48615402)
chr1 (310-390)||(6650606-6650686)
chr1 (57-97)||(9132602-9132642)
chr1 (354-390)||(29753704-29753740)
chr1 (346-390)||(32524378-32524422)
[»] chr7 (36 HSPs)
chr7 (299-390)||(23552118-23552209)
chr7 (298-390)||(26459395-26459487)
chr7 (298-390)||(33869430-33869522)
chr7 (310-390)||(37162335-37162415)
chr7 (297-390)||(22760861-22760954)
chr7 (237-297)||(3377890-3377950)
chr7 (299-379)||(17041008-17041088)
chr7 (298-390)||(17113794-17113886)
chr7 (323-378)||(30217903-30217958)
chr7 (299-390)||(43215184-43215275)
chr7 (298-380)||(18363695-18363777)
chr7 (348-390)||(29538547-29538589)
chr7 (38-98)||(3377729-3377789)
chr7 (298-390)||(39631843-39631935)
chr7 (335-390)||(29785286-29785341)
chr7 (299-390)||(30579335-30579426)
chr7 (299-390)||(35119383-35119474)
chr7 (344-390)||(21558173-21558219)
chr7 (297-390)||(4566413-4566506)
chr7 (304-381)||(41519258-41519335)
chr7 (322-390)||(13106767-13106834)
chr7 (298-390)||(15137552-15137644)
chr7 (299-390)||(25655213-25655304)
chr7 (295-381)||(2962456-2962541)
chr7 (43-97)||(11509830-11509884)
chr7 (106-155)||(3377670-3377719)
chr7 (297-378)||(30442486-30442567)
chr7 (349-390)||(48582822-48582863)
chr7 (343-379)||(7309400-7309436)
chr7 (346-390)||(11700212-11700255)
chr7 (299-379)||(14058253-14058333)
chr7 (299-379)||(14368281-14368361)
chr7 (305-377)||(21877814-21877886)
chr7 (298-390)||(24513796-24513888)
chr7 (346-390)||(27313719-27313763)
chr7 (302-390)||(45976908-45976996)
[»] chr2 (35 HSPs)
chr2 (298-390)||(40416375-40416467)
chr2 (299-390)||(42922414-42922506)
chr2 (298-380)||(5147674-5147756)
chr2 (299-390)||(34041573-34041664)
chr2 (299-378)||(42327392-42327471)
chr2 (299-390)||(42602554-42602645)
chr2 (38-92)||(32625540-32625594)
chr2 (299-390)||(4060199-4060290)
chr2 (343-390)||(13803539-13803586)
chr2 (299-390)||(14500277-14500368)
chr2 (300-387)||(16918566-16918653)
chr2 (299-390)||(19244109-19244200)
chr2 (238-297)||(19466949-19467008)
chr2 (299-377)||(29503271-29503349)
chr2 (343-377)||(40791488-40791522)
chr2 (302-379)||(7415998-7416075)
chr2 (298-375)||(12994376-12994453)
chr2 (298-375)||(42860347-42860424)
chr2 (303-387)||(3001383-3001467)
chr2 (298-390)||(4438964-4439056)
chr2 (299-390)||(11251087-11251178)
chr2 (343-390)||(25637195-25637242)
chr2 (335-378)||(26545876-26545919)
chr2 (343-390)||(45026787-45026834)
chr2 (298-380)||(11062359-11062441)
chr2 (112-158)||(19467177-19467223)
chr2 (344-390)||(30943134-30943179)
chr2 (299-377)||(37480075-37480153)
chr2 (344-390)||(37755956-37756002)
chr2 (299-377)||(39714992-39715070)
chr2 (343-379)||(4262298-4262334)
chr2 (358-390)||(9318060-9318092)
chr2 (62-98)||(29890519-29890555)
chr2 (314-378)||(32650593-32650657)
chr2 (57-97)||(38991706-38991746)
[»] chr5 (19 HSPs)
chr5 (295-390)||(25627053-25627148)
chr5 (299-390)||(14285161-14285252)
chr5 (299-390)||(16773807-16773898)
chr5 (299-390)||(34984806-34984897)
chr5 (297-390)||(29075779-29075872)
chr5 (298-390)||(7918454-7918546)
chr5 (296-390)||(3252274-3252368)
chr5 (299-375)||(87423-87499)
chr5 (310-390)||(43442207-43442287)
chr5 (299-390)||(21549122-21549213)
chr5 (299-377)||(30883196-30883274)
chr5 (297-390)||(14495790-14495883)
chr5 (298-390)||(19043457-19043549)
chr5 (343-377)||(84868-84902)
chr5 (351-384)||(6629892-6629925)
chr5 (297-390)||(6844727-6844820)
chr5 (325-390)||(12669498-12669563)
chr5 (338-374)||(27123893-27123929)
chr5 (41-97)||(39437152-39437208)
[»] chr8 (22 HSPs)
chr8 (298-390)||(33017213-33017305)
chr8 (310-390)||(35690049-35690129)
chr8 (299-390)||(968362-968453)
chr8 (299-390)||(18540298-18540389)
chr8 (301-390)||(8794330-8794419)
chr8 (297-390)||(23361634-23361727)
chr8 (301-379)||(3624582-3624660)
chr8 (299-377)||(16852340-16852418)
chr8 (299-377)||(19703485-19703563)
chr8 (299-377)||(28783060-28783138)
chr8 (43-97)||(40387577-40387631)
chr8 (343-390)||(6536564-6536611)
chr8 (43-97)||(9882311-9882365)
chr8 (321-390)||(1157081-1157150)
chr8 (301-390)||(2203494-2203583)
chr8 (345-390)||(3305173-3305218)
chr8 (321-378)||(11492070-11492127)
chr8 (321-390)||(11942864-11942932)
chr8 (343-384)||(24675503-24675544)
chr8 (57-97)||(1216744-1216784)
chr8 (299-390)||(20994442-20994534)
chr8 (298-390)||(35287715-35287807)
[»] chr6 (16 HSPs)
chr6 (299-390)||(12188288-12188379)
chr6 (301-378)||(32613137-32613214)
chr6 (299-390)||(33549104-33549195)
chr6 (299-379)||(12234503-12234583)
chr6 (346-390)||(24256807-24256851)
chr6 (343-379)||(28841458-28841494)
chr6 (299-390)||(3779339-3779430)
chr6 (343-390)||(9583410-9583456)
chr6 (297-379)||(3715450-3715532)
chr6 (303-381)||(6776601-6776679)
chr6 (43-97)||(19770223-19770277)
chr6 (298-379)||(13227154-13227235)
chr6 (353-390)||(28028583-28028620)
chr6 (322-379)||(34786450-34786507)
chr6 (299-379)||(2616476-2616556)
chr6 (108-148)||(28843347-28843387)
[»] chr3 (30 HSPs)
chr3 (299-390)||(27093346-27093437)
chr3 (299-390)||(37788450-37788541)
chr3 (299-390)||(46518628-46518719)
chr3 (298-379)||(14186647-14186727)
chr3 (299-388)||(16354879-16354968)
chr3 (302-390)||(53412948-53413036)
chr3 (299-390)||(30311306-30311397)
chr3 (298-389)||(49494132-49494223)
chr3 (38-92)||(18694760-18694814)
chr3 (38-92)||(18710279-18710333)
chr3 (298-374)||(8170671-8170747)
chr3 (346-390)||(8796078-8796122)
chr3 (299-390)||(4222141-4222232)
chr3 (299-377)||(8368797-8368875)
chr3 (299-390)||(34062533-34062626)
chr3 (343-389)||(39253741-39253787)
chr3 (298-390)||(28703389-28703481)
chr3 (343-387)||(36010786-36010830)
chr3 (299-390)||(5499392-5499483)
chr3 (299-390)||(15048046-15048137)
chr3 (321-384)||(29563922-29563985)
chr3 (38-92)||(3289522-3289576)
chr3 (43-97)||(18539305-18539359)
chr3 (343-373)||(39976433-39976463)
chr3 (300-390)||(47454602-47454692)
chr3 (321-390)||(4844496-4844565)
chr3 (321-390)||(4870192-4870261)
chr3 (310-390)||(2709388-2709468)
chr3 (334-390)||(3427538-3427594)
chr3 (358-390)||(39041966-39041998)
[»] scaffold0118 (1 HSPs)
scaffold0118 (297-390)||(41618-41711)
[»] scaffold0002 (1 HSPs)
scaffold0002 (302-390)||(94956-95044)
[»] scaffold0070 (1 HSPs)
scaffold0070 (299-390)||(42505-42596)
[»] scaffold0187 (2 HSPs)
scaffold0187 (297-390)||(12406-12500)
scaffold0187 (297-390)||(22734-22828)
[»] scaffold0194 (1 HSPs)
scaffold0194 (321-390)||(13031-13100)
[»] scaffold0063 (1 HSPs)
scaffold0063 (297-390)||(35374-35467)
[»] scaffold0004 (1 HSPs)
scaffold0004 (334-390)||(81549-81605)
[»] scaffold0258 (1 HSPs)
scaffold0258 (299-390)||(15308-15399)
[»] scaffold0180 (1 HSPs)
scaffold0180 (310-381)||(19956-20027)
[»] scaffold0009 (1 HSPs)
scaffold0009 (37-92)||(221840-221895)
[»] scaffold0281 (1 HSPs)
scaffold0281 (41-97)||(641-697)
[»] scaffold0238 (1 HSPs)
scaffold0238 (346-390)||(2696-2740)
[»] scaffold0517 (1 HSPs)
scaffold0517 (299-390)||(7711-7802)
[»] scaffold0126 (1 HSPs)
scaffold0126 (343-390)||(25332-25379)
[»] scaffold0024 (1 HSPs)
scaffold0024 (43-97)||(106752-106806)
[»] scaffold0299 (1 HSPs)
scaffold0299 (312-381)||(11541-11610)
[»] scaffold0498 (1 HSPs)
scaffold0498 (43-91)||(12091-12139)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 20770632 - 20771002
Alignment:
Q  19 aaattttacattagaatgtacttgcagttatgtatgtgatgtacctaactcgactctatatgcacgtggtaccagttttttggatgtacatattcaaata 118  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20770632 aaattttacattagaatgtagttgcagttatgtatgcgatgtacctaactcgactctatatgcatgtggtaccagttttttggatgtacatattcaaata 20770731  T
Q  119 ttcacatcttcgcataacacatcgtcaaattttacattcaaatgtacttgcagttaatcccacgacgtcatataaaattgtacataagaggtatgttaat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| ||||||| ||||||||||||||||| |    
T  20770732 ttcacatcttcgcataacacatcgtcaaattttacattcaaatgtacttgcatttaatcccacaatgtcatacaaaattg-acataagaggtatgttact 20770830  T
Q  219 gannnnnnngtctcctatcgtcaaatcggactaactatgaatgcctggacaccatatatgacatcaacaatgcataacttaacccacttgcgttggccta 318  Q
    ||       ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20770831 gatttttttgtctcctatcgtcaaatcggactaactatgaatgcttggacaccatatatgacatcaacaatgcataacttaacccacttgcgttggccta 20770930  T
Q  319 ggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  20770931 gggatattggcttgaaatctggatgtgtgttccttctcaaggtctcaagttcgattctctcaggtgccaatt 20771002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 37109429 - 37109336
Alignment:
Q  297 ttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||||| |||||||||| ||||||| ||||  | ||||  |||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  37109429 ttaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatt 37109336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 20770593 - 20770661
Alignment:
Q  106 acatattcaaatattcacatcttcgcataacacatcgtcaaattttacattcaaatgtacttgcagtta 174  Q
    |||||||||||||||||||||||| |||||||||| || ||||||||||||  |||||| |||||||||    
T  20770593 acatattcaaatattcacatcttcacataacacatagttaaattttacattagaatgtagttgcagtta 20770661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 2185097 - 2185017
Alignment:
Q  310 gttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||| || |||| || ||||  |||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  2185097 gttggcctagtggtaatggcttggaacctgggagtgtgctccttctcaaagtctcaggttcgattctctccgatgccaatt 2185017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 390
Target Start/End: Complemental strand, 7292871 - 7292783
Alignment:
Q  302 ccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||| ||||| |||| ||||||| |||| || ||||  |||||||||| ||||| |||||| ||||||||||||||  ||||||||    
T  7292871 ccacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaagtctcaggttcgattctctctagtgccaatt 7292783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 314 - 390
Target Start/End: Original strand, 38869783 - 38869859
Alignment:
Q  314 gcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||| ||||||| ||||  ||||||  |||||||||| |||||||||||| ||||||||| ||||| ||||||||    
T  38869783 gcctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattccctctggtgccaatt 38869859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 46545710 - 46545802
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| |||||||||| ||||||| ||||| | |||   |||||||||| |||||| |||||  ||||||| ||||||||| |||||    
T  46545710 taacccacttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctcagattcgattttctctgatgtcaatt 46545802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 7949530 - 7949439
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| | |||||||| ||||||| ||||  | || |  |||||||||| |||||||||||| ||||||||||||||| || |||||    
T  7949530 aacccacttgggctggcctagcggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgtcaatt 7949439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 51250598 - 51250507
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||| | ||||||| ||||  ||||||  |||||||||  |||||| ||||||||||||||| ||| | ||||||||    
T  51250598 aacccacttgggttggcctggtggtattggcttgggatctgggagtgtgctccgcctcaagatctcaagttcgattccctccggtgccaatt 51250507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 23972909 - 23972963
Alignment:
Q  43 cagttatgtatgtgatgtacctaactcgactctatatgcacgtggtaccagtttt 97  Q
    ||||||||||||  ||||  |||||||||||||||||||| ||||||||||||||    
T  23972909 cagttatgtatgcaatgtctctaactcgactctatatgcatgtggtaccagtttt 23972963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 21660220 - 21660139
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctct 380  Q
    |||| ||||| ||||| || | ||||||||||||| ||||||  |||||||| | ||| ||||||||||||||||| |||||    
T  21660220 aaccaacttgggttggtctggtggtattgacttgagatctgggagtgtgctcttcctcgaggtctcaagttcgattatctct 21660139  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 21668984 - 21668903
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctct 380  Q
    |||| ||||| ||||| || | ||||||||||||| ||||||  |||||||| | ||| ||||||||||||||||| |||||    
T  21668984 aaccaacttgggttggtctggtggtattgacttgagatctgggagtgtgctcttcctcgaggtctcaagttcgattatctct 21668903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 31802098 - 31802037
Alignment:
Q  323 tattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatg 384  Q
    ||||||||||  ||||||| ||||| |||| |||||||||||| |||||| |||||||||||    
T  31802098 tattgacttgtgatctggaagtgtggtcctcctcaaggtctcatgttcgactctctctgatg 31802037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 44195038 - 44194969
Alignment:
Q  321 ggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||  ||| |||||||| ||||| | ||||||||||||||| |||| |||||||||| ||||||||    
T  44195038 ggtattggtttggaatctggaagtgtgtttcttctcaaggtctcatgttcaattctctctggtgccaatt 44194969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 10048027 - 10048071
Alignment:
Q  346 tgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||||    
T  10048027 tgctccttctcatggtctcaggttcgattctctctgatgctaatt 10048071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 28635695 - 28635787
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| |||| ||| | |||| |||||||  ||||||  |||||||||| ||  |||||| | ||||||||||||||| ||||||||    
T  28635695 taacccacttgggttgtcctggtggtactgacttgggatctgggagtgtgctcctcctggaggtcttaggttcgattctctctggtgccaatt 28635787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 4249221 - 4249268
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||||| ||| ||||||||||| ||||||||    
T  4249221 gtgtgctcctcctcaaggtctcaggtttgattctctctggtgccaatt 4249268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 23378000 - 23378047
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||||| ||||||||||||||  ||||||||    
T  23378000 gtgtgctcctcctcaaggtctcaggttcgattctctctagtgccaatt 23378047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 29195139 - 29195185
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  29195139 gtgtgctcct-ctcaaggtcgcaagttcgattctctctaatgccaatt 29195185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 51622529 - 51622576
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||||| |||||| |||||||| ||||||||    
T  51622529 gtgtgctcctcctcaaggtctcaggttcgactctctctggtgccaatt 51622576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 7539637 - 7539671
Alignment:
Q  346 tgctccttctcaaggtctcaagttcgattctctct 380  Q
    |||||||||||||||||||| ||||||||||||||    
T  7539637 tgctccttctcaaggtctcaggttcgattctctct 7539671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 377
Target Start/End: Original strand, 32992656 - 32992690
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctc 377  Q
    |||||||||| ||||||||||||||||||||||||    
T  32992656 gtgtgctcctcctcaaggtctcaagttcgattctc 32992690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 8030236 - 8030199
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctct 380  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  8030236 gtgtgctcctcctcaaggtctcaagttcgattccctct 8030199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 9609818 - 9609863
Alignment:
Q  47 tatgtatgtgatgtacctaactcgactctatatgcacgtggtacca 92  Q
    ||||||||  |||||||||||| ||||||||||||| |||||||||    
T  9609818 tatgtatggaatgtacctaacttgactctatatgcatgtggtacca 9609863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 31826608 - 31826685
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattc 375  Q
    ||||||||||| |||| ||||| ||||| | ||||  || ||   |||||||||| ||||||||||||||||||||||    
T  31826608 taacccacttgggttgccctagtggtataggcttgggatttgcgagtgtgctcctcctcaaggtctcaagttcgattc 31826685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 21404850 - 21404806
Alignment:
Q  346 tgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||| |||||||||||| ||| ||||||||||||| ||||||    
T  21404850 tgctcctcctcaaggtctcatgtttgattctctctgataccaatt 21404806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 49576926 - 49576890
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    |||||||||| |||||||||||| |||||||||||||    
T  49576926 gtgtgctcctcctcaaggtctcaggttcgattctctc 49576890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 301 - 390
Target Start/End: Complemental strand, 33700847 - 33700758
Alignment:
Q  301 cccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||| |||||||||| ||||||| |||| |||||||  |||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  33700847 cccacttgggttggcctagtggtattggcttggaatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatt 33700758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 36371470 - 36371561
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||| ||||||| |||| || ||||  |||||||||| |||||||||| | ||||||||||||||||||||||||    
T  36371470 aacccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctgaggttcgattctctctgatgccaatt 36371561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 8904414 - 8904505
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||||||||  |||||||||||  || ||   |||||||||| |||||||||||||||||||||||||||| ||||||||    
T  8904414 aacccacttgggttggcctagtagtattgacttgggatatgtgagtgtgctcctcctcaaggtctcaagttcgattctctctggtgccaatt 8904505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 2799874 - 2799953
Alignment:
Q  311 ttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||| ||||| | ||||| ||||||  |||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  2799874 ttggcctagtggtataggcttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatt 2799953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 4566548 - 4566639
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||| | ||||| |||| || ||||  |||||||||| |||| ||||||| |||||||||||||||||| |||||    
T  4566548 aacccacttgggttggcctagtgatattggcttggaacctgggagtgtgctcctcctcagggtctcaggttcgattctctctgatgtcaatt 4566639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 8177258 - 8177167
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||| ||| |||||||||| ||||||| ||||  ||||||  |||||||||| |||||||| ||| ||||||||||||||| ||||||||    
T  8177258 aacccatttgagttggcctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggttcgattctctctggtgccaatt 8177167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 51814494 - 51814585
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||||||   ||||||||||||| |||||   |||||||||| |||||||||||| ||||||||||||| | ||||||||    
T  51814494 aacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatt 51814585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 390
Target Start/End: Complemental strand, 9165272 - 9165180
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| |||||||||| ||||||| ||||  | ||||  |||||||||| ||||| |||||| |||| |||||||||| ||||||||    
T  9165272 taacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctcaggttcaattctctctggtgccaatt 9165180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 381
Target Start/End: Original strand, 51703777 - 51703861
Alignment:
Q  297 ttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctg 381  Q
    |||||||| ||| ||||| |||| ||||||| |||| |||||||  |||||||||| ||||| || ||| |||||||||||||||    
T  51703777 ttaacccatttgggttggtctagtggtattggcttggaatctgggagtgtgctcctcctcaaagtttcaggttcgattctctctg 51703861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 390
Target Start/End: Original strand, 1247117 - 1247204
Alignment:
Q  303 cacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||| |||||| ||| |||| ||| |||||| ||||  |||| ||||| |||||||||||| ||||||||||||||| | ||||||    
T  1247117 cacttgggttggcttagtggtactgatttgaaacctgggagtgtactcctcctcaaggtctcaggttcgattctctctggtaccaatt 1247204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 35699963 - 35700045
Alignment:
Q  310 gttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctca--agttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||||| || ||||| ||||||| || ||||||||||||   ||||||||||||||| || |||||    
T  35699963 gttggcctagtggtattgacttggaaactggaagtgtgcttctgctcaaggtctcaggggttcgattctctctggtgtcaatt 35700045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 17745334 - 17745241
Alignment:
Q  297 ttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||| |||||| |||||||||| ||||||| ||||  | |||   |||||||||| ||| |||||||| ||||||||||||||| || |||||    
T  17745334 ttaacgcacttgggttggcctagtggtattggcttgggacctgagcgtgtgctcctcctcgaggtctcatgttcgattctctctggtgtcaatt 17745241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 40257399 - 40257476
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattct 376  Q
    |||||||||| |||||||| | ||||||| ||||| | ||||  |||||||||| ||| ||||||||||||| |||||    
T  40257399 aacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagttcaattct 40257476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 374
Target Start/End: Complemental strand, 7743402 - 7743326
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgatt 374  Q
    ||||||||||| |||||||||| |||||| ||| | ||| |||  ||||| |||| ||| |||||||||||||||||    
T  7743402 taacccacttgggttggcctagtggtattaactaggaatttgggagtgtggtcctcctctaggtctcaagttcgatt 7743326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 378
Target Start/End: Complemental strand, 15786393 - 15786317
Alignment:
Q  302 ccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctct 378  Q
    ||||||| ||||| ||||  |||||| ||||  ||||||  |||||||||| |||||||||||| ||||||||||||    
T  15786393 ccacttgggttggtctagtagtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattctct 15786317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 377
Target Start/End: Complemental strand, 52029991 - 52029935
Alignment:
Q  321 ggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctc 377  Q
    ||||||||||||| | || |  ||||||||||||||||||||||| |||||||||||    
T  52029991 ggtattgacttgagacctaggagtgtgctccttctcaaggtctcaggttcgattctc 52029935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 3265968 - 3266015
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||||| ||||||||||||||| | ||||||    
T  3265968 gtgtgctcctcctcaaggtctcaggttcgattctctctggttccaatt 3266015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 18249933 - 18249886
Alignment:
Q  45 gttatgtatgtgatgtacctaactcgactctatatgcacgtggtacca 92  Q
    ||||||||||| |||| | ||||||||||||||||||| |||||||||    
T  18249933 gttatgtatgtaatgtccttaactcgactctatatgcatgtggtacca 18249886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 21547556 - 21547465
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||| ||||| |||||||||| ||||||| ||||  |  |||  | |||||||| ||| |||| ||| ||||||||||||||||||||||||    
T  21547556 aaccgacttgggttggcctagtggtattggcttgggacatgggagggtgctcctcctcgaggtttcaggttcgattctctctgatgccaatt 21547465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Complemental strand, 31605880 - 31605833
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||||||||||||||||| | | ||||||||    
T  31605880 gtgtgctcctcctcaaggtctcaagttcgattctccccggtgccaatt 31605833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 37400274 - 37400365
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||| ||||| ||||| || | ||||||| ||||| | ||| | |||||||||| || |||||||||||||||||||| || | ||||||||    
T  37400274 aaccaacttgggttggtctggtggtattggcttgagacctgaaagtgtgctcctccttaaggtctcaagttcgattctatccggtgccaatt 37400365  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 379
Target Start/End: Original strand, 50901579 - 50901662
Alignment:
Q  297 ttaacccacttgcgttggcctaggggta-ttgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    |||||||||||| |||||||||| |||| ||| ||||  | ||||  |||||||||| ||| ||||||||| ||||||||||||    
T  50901579 ttaacccacttgggttggcctagtggtaattggcttgggacctggtagtgtgctcctcctcgaggtctcaaattcgattctctc 50901662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 89935 - 89989
Alignment:
Q  38 acttgcagttatgtatgtgatgtacctaactcgactctatatgcacgtggtacca 92  Q
    ||||||||| |||||||  |||| ||||||||||||||||||||| || ||||||    
T  89935 acttgcagtaatgtatgcaatgtccctaactcgactctatatgcatgtagtacca 89989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 19528403 - 19528325
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctc 377  Q
    |||||||||| |||||||| | ||||||| ||||  ||||    |||||||||| |||||||||||| |||||||||||    
T  19528403 aacccacttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctcaggttcgattctc 19528325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 377
Target Start/End: Complemental strand, 48615402 - 48615341
Alignment:
Q  316 ctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctc 377  Q
    |||| |||||| ||||| |||||||  ||||||||||||||||||| |||| || |||||||    
T  48615402 ctagtggtattaacttggaatctgggagtgtgctccttctcaaggtttcaaatttgattctc 48615341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 6650606 - 6650686
Alignment:
Q  310 gttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||||| ||||  ||| ||  || ||||||| ||||| |||||| ||||||||||||||| || |||||    
T  6650606 gttggcctagtggtattggcttgggatcggggagtatgctcctcctcaatgtctcaggttcgattctctctggtgtcaatt 6650686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 9132642 - 9132602
Alignment:
Q  57 atgtacctaactcgactctatatgcacgtggtaccagtttt 97  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
T  9132642 atgtccctaactcgactctatatgcatgtggtaccggtttt 9132602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 29753704 - 29753740
Alignment:
Q  354 ctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  29753704 ctcaaggtctcaggttcgattctctctggtgccaatt 29753740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 32524378 - 32524422
Alignment:
Q  346 tgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||  ||||| ||||||||||||||||||||| ||||||||    
T  32524378 tgctcctcttcaagatctcaagttcgattctctctggtgccaatt 32524422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 23552118 - 23552209
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||| | ||||||||||  | ||||  |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  23552118 aacccacttgggttggcctagtgctattgacttgggacctgggagtgtgctcctcctcaaggtctcaagttcgattctctctaatgccaatt 23552209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 298 - 390
Target Start/End: Complemental strand, 26459487 - 26459395
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| |||||||||| ||||||| ||||  | ||||  |||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  26459487 taacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatt 26459395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 298 - 390
Target Start/End: Complemental strand, 33869522 - 33869430
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| ||||||||||  |||||| ||||| | ||||| ||||||||||||||||||||||  ||||||||||||||| || |||||    
T  33869522 taacccacttgggttggcctagtagtattggcttgagacctggaagtgtgctccttctcaaggtctctggttcgattctctctggtgtcaatt 33869430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 37162415 - 37162335
Alignment:
Q  310 gttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||  ||||||| || |||  ||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  37162415 gttggcctagtggtaaagacttgagatttgggagtgtgcttcttctcaaggtctcaagttcgattctctctggtgccaatt 37162335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 390
Target Start/End: Original strand, 22760861 - 22760954
Alignment:
Q  297 ttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||||| ||||| || | ||||||||||||  | ||||  |||||||||| |||||||||||| ||||||||||| | ||||||||||    
T  22760861 ttaacccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctccccgatgccaatt 22760954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 3377890 - 3377950
Alignment:
Q  237 cgtcaaatcggactaactatgaatgcctggacaccatatatgacatcaacaatgcataact 297  Q
    |||||||| ||||| ||||||||||  ||||||||||||| ||||||||||||||||||||    
T  3377890 cgtcaaataggactgactatgaatgtatggacaccatataagacatcaacaatgcataact 3377950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 17041088 - 17041008
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    |||||||||| ||||| |||| || |||| ||||  ||||||| |||||||||| |||||||||||| |||||||||||||    
T  17041088 aacccacttgggttggtctagtggcattggcttgggatctggaagtgtgctcctcctcaaggtctcaggttcgattctctc 17041008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 17113794 - 17113886
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| | ||||||||  |||||| |||  || ||||  ||||||| || |||||||||||||||||||||||||||||||| ||||    
T  17113794 taacccacttggggtggcctagttgtattggcttagaacctgggagtgtgcttctcctcaaggtctcaagttcgattctctctgatgctaatt 17113886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 323 - 378
Target Start/End: Original strand, 30217903 - 30217958
Alignment:
Q  323 tattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctct 378  Q
    ||||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||    
T  30217903 tattggcttgatatctggaagtgtgctcctcctcaaggtctcaagttcgattctct 30217958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 43215184 - 43215275
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||| |||| ||||||| ||||  | || |  |||||||||| |||||||||||| |||||||||||||| |||||||||    
T  43215184 aacccacttgggttggtctagtggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctctcttatgccaatt 43215275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 18363695 - 18363777
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctct 380  Q
    ||||||||||| |||||||||| ||||| | ||||| || |||  |||||||||| |||||||||||| ||| ||||||||||    
T  18363695 taacccacttgggttggcctagtggtataggcttgagatttgggagtgtgctcctcctcaaggtctcaggtttgattctctct 18363777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 29538589 - 29538547
Alignment:
Q  348 ctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  29538589 ctccttctcaaggtctcaagttcgattctccctgatgccaatt 29538547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 3377729 - 3377789
Alignment:
Q  38 acttgcagttatgtatgtgatgtacctaactcgactctatatgcacgtggtaccagttttt 98  Q
    |||||||| ||||||||  |||||||||||||||||||||| ||||| |||||| ||||||    
T  3377729 acttgcagatatgtatgcaatgtacctaactcgactctatacgcacgcggtaccggttttt 3377789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 39631843 - 39631935
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| |||||||||| ||||||| ||||  | ||||  ||  |||||| |||||||||||| ||||||||||||||  ||||||||    
T  39631843 taacccacttgggttggcctagtggtattggcttgggacctgggagtaagctcctcctcaaggtctcaggttcgattctctcttgtgccaatt 39631935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 390
Target Start/End: Complemental strand, 29785341 - 29785286
Alignment:
Q  335 atctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||| |||||||||| |||||||||||| |||||||||| |||| ||||||||    
T  29785341 atctggaagtgtgctcctcctcaaggtctcatgttcgattctttctggtgccaatt 29785286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 30579335 - 30579426
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||| | ||||||| ||||| | ||||  |||| | ||| |||||||||||| |||||||| |||||| ||||||||    
T  30579335 aacccacttgggttggcctggtggtattggcttgagacctgggagtgtccacctcctcaaggtctcaggttcgattttctctggtgccaatt 30579426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 35119383 - 35119474
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||| ||| |||||||||| ||||||||||||  |||||| ||| ||||| | |||||| | ||| |||||||||||| | |||||||||    
T  35119383 aacccatttgggttggcctagtggtattgacttgggatctgggtgtatgctcatcctcaagatttcaggttcgattctctttaatgccaatt 35119474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 390
Target Start/End: Original strand, 21558173 - 21558219
Alignment:
Q  344 tgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  21558173 tgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatt 21558219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 4566506 - 4566413
Alignment:
Q  297 ttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||| ||||||| |||||||||| |||||||||||   | || |  ||||  ||||||||||||||||| ||| ||||||||||| ||||||||    
T  4566506 ttaatccacttgggttggcctagtggtattgacttcggaccttggagtgtattccttctcaaggtctcaggtttgattctctctggtgccaatt 4566413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 41519335 - 41519258
Alignment:
Q  304 acttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctg 381  Q
    ||||| |||||||||| ||||||||||||  || | |  |||||||||| |||||||||||| ||||| |||||||||    
T  41519335 acttgggttggcctagtggtattgacttgggatttaggagtgtgctcctcctcaaggtctcaggttcgcttctctctg 41519258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 13106834 - 13106767
Alignment:
Q  322 gtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||| |||  ||||||| |||| ||||| |||||||||||| ||||||||||||||||||| ||||    
T  13106834 gtattgatttgggatctgga-gtgtactcctcctcaaggtctcaggttcgattctctctgatgctaatt 13106767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 15137552 - 15137644
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| |||||||| | |||| |||||||  || | |  |||||||||| |||||||||||| ||| ||||||||||| || |||||    
T  15137552 taacccacttgggttggcctggtggtactgacttgggatttaggagtgtgctcctcctcaaggtctcaggttagattctctctggtgtcaatt 15137644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 25655304 - 25655213
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||| || |||||  ||| ||||||||||||  |||||   ||||| |||| |||||||| ||| ||||||||||||||| ||||||||    
T  25655304 aacccacctgggttggtttagtggtattgacttgggatctgtgagtgtgatcctcctcaaggtttcaggttcgattctctctggtgccaatt 25655213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 381
Target Start/End: Original strand, 2962456 - 2962541
Alignment:
Q  295 acttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctg 381  Q
    |||||||||||||| ||||| |||| |||||||  ||| || |||   |||||||||| |||||| ||||| |||||||||||||||    
T  2962456 acttaacccacttg-gttggtctagtggtattggtttggaacctgtgagtgtgctcctcctcaagatctcaggttcgattctctctg 2962541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 11509884 - 11509830
Alignment:
Q  43 cagttatgtatgtgatgtacctaactcgactctatatgcacgtggtaccagtttt 97  Q
    ||||||||||||  ||||  |||||||||||||||||||| |||||||| |||||    
T  11509884 cagttatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggtttt 11509830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 3377670 - 3377719
Alignment:
Q  106 acatattcaaatattcacatcttcgcataacacatcgtcaaattttacat 155  Q
    |||| ||||||||||||||||||| ||||| ||||| |||||||| ||||    
T  3377670 acatcttcaaatattcacatcttcacataatacatcatcaaatttcacat 3377719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 30442486 - 30442567
Alignment:
Q  297 ttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctct 378  Q
    |||||||||||| ||||||| || ||||||| ||||  | ||||  || ||||||| |||||||||| | ||||||||||||    
T  30442486 ttaacccacttgggttggcccagtggtattggcttgggacctgggagtttgctcctcctcaaggtctgaggttcgattctct 30442567  T

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Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 48582863 - 48582822
Alignment:
Q  349 tccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||| ||||||||||||||||| | |||||||||||||||||    
T  48582863 tcctcctcaaggtctcaagttcaactctctctgatgccaatt 48582822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 7309400 - 7309436
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  7309400 gtgtgctcctcctcgaggtctcaagttcgattctctc 7309436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 11700212 - 11700255
Alignment:
Q  346 tgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||| |||||||||||| ||||||||||||||| ||||||||    
T  11700212 tgctcctcctcaaggtctcaggttcgattctctctg-tgccaatt 11700255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 14058253 - 14058333
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    ||||| |||| |||||||| | ||||||| |||| || |||   |||||||| | |||||||||||| |||||||||||||    
T  14058253 aacccgcttgagttggcctggtggtattgtcttggaacctgagagtgtgctcatcctcaaggtctcaggttcgattctctc 14058333  T

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Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 14368281 - 14368361
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    ||||| |||| |||||||| | ||||||| |||| || |||   |||||||| | |||||||||||| |||||||||||||    
T  14368281 aacccgcttgagttggcctggtggtattgtcttggaacctgagagtgtgctcatcctcaaggtctcaggttcgattctctc 14368361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 21877814 - 21877886
Alignment:
Q  305 cttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctc 377  Q
    |||| |||||||||| ||||||||||||  | ||||  | |||||||| || ||||||||| |||||||||||    
T  21877814 cttgagttggcctagtggtattgacttgggacctgggagggtgctcctccttaaggtctcacgttcgattctc 21877886  T

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Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 24513796 - 24513888
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| |||||||||| ||||||| ||||| || |||  |||| || || ||  |||||||| |||||||| || |||||| |||||    
T  24513796 taacccacttgggttggcctagtggtattggcttgagatttgggagtgtacttctccttgaggtctcaggttcgattttcactgatgtcaatt 24513888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 27313763 - 27313719
Alignment:
Q  346 tgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||| |||||||| |||  |||||||||||||||||||||||    
T  27313763 tgctcctcctcaaggtttcagattcgattctctctgatgccaatt 27313719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 390
Target Start/End: Complemental strand, 45976996 - 45976908
Alignment:
Q  302 ccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||| |||||||||| ||||||| ||||  | ||||  |||||||||| || ||||| | ||||||  || |||||||||||||||    
T  45976996 ccacttgggttggcctagtggtattggcttgtgacctgggagtgtgctcctccttaaggttttaagttcatttatctctgatgccaatt 45976908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 298 - 390
Target Start/End: Complemental strand, 40416467 - 40416375
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| |||||||||| |||||||||||| || ||||  || ||||||| || ||||||||| ||||||||||||||| ||||||||    
T  40416467 taacccacttgggttggcctagtggtattgacttggaacctgggagtatgctcctccttaaggtctcaggttcgattctctctggtgccaatt 40416375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 42922414 - 42922506
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaa-ggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||| ||||||| |||| || ||||  |||||||||| ||||| ||||||| ||||||||||||||| ||||||||    
T  42922414 aacccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaaggtctcaggttcgattctctctggtgccaatt 42922506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 5147756 - 5147674
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctct 380  Q
    ||||||||||| ||||| |||| ||||||||||||| ||||||  || |||||||||||||||||||   |||||||||||||    
T  5147756 taacccacttgggttggtctagtggtattgacttgagatctgggagtatgctccttctcaaggtctcggattcgattctctct 5147674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 34041664 - 34041573
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||| |||||||||||   |||||   |||||||||| |||||||||||| ||| ||||| ||||| ||||||||    
T  34041664 aacccacttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctcaggtttgattccctctggtgccaatt 34041573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 42327471 - 42327392
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctct 378  Q
    |||||||||| |||||||||| ||||||| ||||  | ||||  |||||||||| |||||||||||| ||||||||||||    
T  42327471 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctct 42327392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 42602554 - 42602645
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||| ||||||| ||||  | ||||  ||||||||||||||||||||| | ||| ||||||||| | ||||||||    
T  42602554 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctccttctcaaggtcttaggtttgattctctccggtgccaatt 42602645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 32625594 - 32625540
Alignment:
Q  38 acttgcagttatgtatgtgatgtacctaactcgactctatatgcacgtggtacca 92  Q
    |||||||||||||||||  |||| ||||||||||||||||||||| |||||||||    
T  32625594 acttgcagttatgtatgcaatgtccctaactcgactctatatgcatgtggtacca 32625540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 4060290 - 4060199
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||| |||||||  |||||| |||   ||||||| || |||||| ||||| ||||||||||||||| || |||||    
T  4060290 aacccacttgggttggcctagtggtattggtttgaaacctgagagtgtgcttctcctcaagatctcaggttcgattctctctggtgtcaatt 4060199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 13803539 - 13803586
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||||    
T  13803539 gtgtgctcctcctcaaggtctcaggttcgattatctctgatgccaatt 13803586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 14500277 - 14500368
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||  ||||||||| |||||   ||||| ||||||  |||||||||| ||| ||||||||  |||||||||||||| ||||||||    
T  14500277 aacccacttggtttggcctagtggtataagcttgagatctgggagtgtgctcctcctctaggtctcagattcgattctctctggtgccaatt 14500368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 387
Target Start/End: Complemental strand, 16918653 - 16918566
Alignment:
Q  300 acccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgcca 387  Q
    ||||||||| |||||||||| |||||||  |||  ||||||  |||||||||| |||||||||| | ||| ||||||||||| |||||    
T  16918653 acccacttgggttggcctagtggtattggtttgggatctgggagtgtgctcctcctcaaggtcttaggttggattctctctggtgcca 16918566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 19244109 - 19244200
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||| |||  ||||||||||||  | |||   |||||||||| | |||||||||| ||||||||||||||| ||||||||    
T  19244109 aacccacttgggttggtctactggtattgacttgggacctgagagtgtgctcctccccaaggtctcaggttcgattctctctggtgccaatt 19244200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 297
Target Start/End: Complemental strand, 19467008 - 19466949
Alignment:
Q  238 gtcaaatcggactaactatgaatgcctggacaccatatatgacatcaacaatgcataact 297  Q
    ||||||| ||||||||||||||||| ||||| |||||||  |||||||||||||| ||||    
T  19467008 gtcaaataggactaactatgaatgcatggacgccatataaaacatcaacaatgcacaact 19466949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 29503271 - 29503349
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctc 377  Q
    |||||||||| |||||||||| |||||||  |||  | ||||  |||||||||| |||||||||||| |||||||||||    
T  29503271 aacccacttgggttggcctagtggtattggtttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 29503349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 40791522 - 40791488
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctc 377  Q
    |||||||||||||||||||||||||||||||||||    
T  40791522 gtgtgctccttctcaaggtctcaagttcgattctc 40791488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 379
Target Start/End: Original strand, 7415998 - 7416075
Alignment:
Q  302 ccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    ||||||| ||||  |||| |||||||||||| |||||| | ||||| ||||||||||||| ||| ||| |||||||||    
T  7415998 ccacttgggttgatctagtggtattgacttgtaatctgtaagtgtgttccttctcaaggtttcatgtttgattctctc 7416075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 12994453 - 12994376
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattc 375  Q
    |||||| |||| ||||| |||| ||||||||||||  | ||||  |||||||||| || |||||||||||||||||||    
T  12994453 taacccgcttgagttggtctagtggtattgacttgggacctgggagtgtgctcctccttaaggtctcaagttcgattc 12994376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 42860347 - 42860424
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattc 375  Q
    ||||| ||||| |||||||| | | ||||||||||| | ||||  |||||||||| ||| ||||||||||||||||||    
T  42860347 taacctacttgagttggcctggtgatattgacttgagacctgggagtgtgctcctcctcgaggtctcaagttcgattc 42860424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 3001383 - 3001467
Alignment:
Q  303 cacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgcca 387  Q
    |||||| |||||||||| ||||||||||||| |||| |  |||||||||| ||  || ||||| |||||||| |||||| |||||    
T  3001383 cacttgggttggcctagtggtattgacttgagatctaggagtgtgctcctccttgagatctcaggttcgattatctctggtgcca 3001467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 390
Target Start/End: Complemental strand, 4439056 - 4438964
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| |||||||||  |||||| |||||  |||||   |||||||||| ||||||||| || |||||||||| |||| | ||||||    
T  4439056 taacccacttgggttggcctaatggtattaacttgggatctgagagtgtgctcctcctcaaggtcgcatgttcgattctttctggtaccaatt 4438964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 11251087 - 11251178
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||  |||||| ||| ||||||| ||||  |  |||| |||||||||| |||||||||||| ||| ||||||||||| || |||||    
T  11251087 aacccacttaggttggcttagtggtattggcttgggacttggaagtgtgctcctcctcaaggtctcaggtttgattctctctggtgtcaatt 11251178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 25637195 - 25637242
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  25637195 gtgtgctccttctcgaggtctcaggttcggttctctccgatgccaatt 25637242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 26545876 - 26545919
Alignment:
Q  335 atctggatgtgtgctccttctcaaggtctcaagttcgattctct 378  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||    
T  26545876 atctggaagtgtgctccttctcgaggtctcaagtttgattctct 26545919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 45026787 - 45026834
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||||| ||| ||||||||||| ||||||||    
T  45026787 gtgtgctcctcctcaaggtctcatgtttgattctctctggtgccaatt 45026834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 11062359 - 11062441
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctct 380  Q
    ||||||||||| |||||||||| | ||||| |||| ||  |||  ||||||| || |||||||||||| ||| ||||||||||    
T  11062359 taacccacttgggttggcctagtgatattggcttggaacttgggagtgtgcttctcctcaaggtctcaggtttgattctctct 11062441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 19467223 - 19467177
Alignment:
Q  112 tcaaatattcacatcttcgcataacacatcgtcaaattttacattca 158  Q
    |||||||||||||||||| |||||||||| |||||| || |||||||    
T  19467223 tcaaatattcacatcttcacataacacattgtcaaacttcacattca 19467177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 390
Target Start/End: Original strand, 30943134 - 30943179
Alignment:
Q  344 tgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||| |||||||||||||||| |||||||||| |||||||||    
T  30943134 tgtgctcct-ctcaaggtctcaagtttgattctctcttatgccaatt 30943179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 37480075 - 37480153
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctc 377  Q
    |||||||||| |||||||| | ||||||| ||||  | |||   |||||||||| |||||||||||| |||||||||||    
T  37480075 aacccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctc 37480153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 37756002 - 37755956
Alignment:
Q  344 tgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||| ||| ||||||||||||||| || ||||||||||||||    
T  37756002 tgtgctcctactcgaggtctcaagttcgactccctctgatgccaatt 37755956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 39714992 - 39715070
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctc 377  Q
    |||||||||| |||||| | | ||||||||||||  | ||||  |||||||||| ||| |||||||| |||||||||||    
T  39714992 aacccacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctc 39715070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 4262334 - 4262298
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    |||||||||| |||||||||||| |||||||||||||    
T  4262334 gtgtgctcctcctcaaggtctcaggttcgattctctc 4262298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 358 - 390
Target Start/End: Complemental strand, 9318092 - 9318060
Alignment:
Q  358 aggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||| ||||||||||||||||||||||||    
T  9318092 aggtctcaggttcgattctctctgatgccaatt 9318060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 29890519 - 29890555
Alignment:
Q  62 cctaactcgactctatatgcacgtggtaccagttttt 98  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  29890519 cctaactcgactctatatgcatgtggtaccaggtttt 29890555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 378
Target Start/End: Complemental strand, 32650657 - 32650593
Alignment:
Q  314 gcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctct 378  Q
    |||||| |||| |||||||| ||||||  |||| ||||| |||||||||||  ||||||||||||    
T  32650657 gcctagtggtactgacttgagatctgggagtgtactcctgctcaaggtctcgggttcgattctct 32650593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 38991706 - 38991746
Alignment:
Q  57 atgtacctaactcgactctatatgcacgtggtaccagtttt 97  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
T  38991706 atgtccctaactcgactctatatgcatgtggtaccggtttt 38991746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 25627053 - 25627148
Alignment:
Q  295 acttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||||||| |||||||||| ||||||| |||| ||  |||  |||||||||| |||||||||||| ||||||||||||||| || |||||    
T  25627053 acttaacccacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgtcaatt 25627148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 14285161 - 14285252
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||||| || || |||| |||| || ||||  |||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  14285161 aacccacttgggttggccgagtggaattggcttggaacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatt 14285252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 16773807 - 16773898
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||| || | ||||||||||||  | ||||  |||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  16773807 aacccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatt 16773898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 34984806 - 34984897
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||| |||| ||||||| |||| || ||||  |||||||||| |||||||||| | ||||||||||||||| ||||||||    
T  34984806 aacccacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtcttaggttcgattctctctggtgccaatt 34984897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 390
Target Start/End: Original strand, 29075779 - 29075872
Alignment:
Q  297 ttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||||| ||| |||||| ||||||| ||||  ||||||  |||||||||| ||| || ||||| ||||||||||||||| ||||||||    
T  29075779 ttaacccacttgggtttgcctagtggtattggcttgggatctgggagtgtgctcctcctcgagatctcatgttcgattctctctggtgccaatt 29075872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 390
Target Start/End: Complemental strand, 7918546 - 7918454
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| |||||||||| ||||||| |||| || ||||  |||  ||||| |||||||||| | ||||||||||||||| ||||||||    
T  7918546 taacccacttgggttggcctagtggtattggcttggaacctgggagtgcactcctcctcaaggtcttaggttcgattctctctggtgccaatt 7918454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 390
Target Start/End: Complemental strand, 3252368 - 3252274
Alignment:
Q  296 cttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||||| |||||||||| ||||||||||||| |  |||  |||  ||| | |||| | ||||| ||||||||||||||||||||||||    
T  3252368 cttaacccacttgggttggcctagtggtattgacttgagacttgggagtgcactcttcctcaggctctcaggttcgattctctctgatgccaatt 3252274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 375
Target Start/End: Complemental strand, 87499 - 87423
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattc 375  Q
    |||||||||  |||||||||| ||||||| |||| |||||||  |||||||||| |||||||||||| ||| |||||    
T  87499 aacccacttcggttggcctagtggtattgccttggaatctgggagtgtgctcctcctcaaggtctcaggtttgattc 87423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 43442207 - 43442287
Alignment:
Q  310 gttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||| ||| |||||||  |||| ||||||  |||||||||| |||||||||||| ||||||||||||||| || |||||    
T  43442207 gttggcatagtggtattggtttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctgttgtcaatt 43442287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 21549213 - 21549122
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||| ||||||| ||||  | ||||  |||||||||| || || ||||||||||||||| |||||  ||||||||    
T  21549213 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctccttaaagtctcaagttcgattttctctagtgccaatt 21549122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 30883274 - 30883196
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctc 377  Q
    |||||||||| ||||| |||| ||||||| ||||  | ||||  |||||||||| ||||||||||||||||| ||||||    
T  30883274 aacccacttgggttggtctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaagttcaattctc 30883196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 14495883 - 14495790
Alignment:
Q  297 ttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||| ||| ||||| || | ||||||||||||  ||||||  |||||||||| ||| ||||||||  || ||||||||| ||||||||||    
T  14495883 ttaacccatttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcagatttgattctctccgatgccaatt 14495790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 19043457 - 19043549
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| |||||||||| | |||||||||| ||  |||  ||||| |||||||||| |||||| |||| || ||||||  ||||||||    
T  19043457 taacccacttgggttggcctagtgctattgacttggaacttgggagtgtgttccttctcaaagtctcaggttcaatcctctctagtgccaatt 19043549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 377
Target Start/End: Original strand, 84868 - 84902
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctc 377  Q
    |||||||||| ||||||||||||||||||||||||    
T  84868 gtgtgctcctcctcaaggtctcaagttcgattctc 84902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 6629925 - 6629892
Alignment:
Q  351 cttctcaaggtctcaagttcgattctctctgatg 384  Q
    |||||||||||||||||||||||| |||||||||    
T  6629925 cttctcaaggtctcaagttcgattatctctgatg 6629892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 390
Target Start/End: Original strand, 6844727 - 6844820
Alignment:
Q  297 ttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||||| |||||||  | |||||||||||| ||| |||  ||||| |||| ||| |||||| | |||||||| |||||  ||||||||    
T  6844727 ttaacccacttgggttggccaggtggtattgacttggaatttgggagtgtgttcctcctcgaggtctaaggttcgattatctctcgtgccaatt 6844820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 12669498 - 12669563
Alignment:
Q  325 ttgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||| ||||| ||  |||||| ||||| ||||| ||||||||||||||||||| || |||||    
T  12669498 ttgacttggaatcttgaaatgtgcttcttcttaaggtttcaagttcgattctctctggtgtcaatt 12669563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 27123929 - 27123893
Alignment:
Q  338 tggatgtgtgctccttctcaaggtctcaagttcgatt 374  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  27123929 tggatgtgtactccttctcgaggtctcaagttcgatt 27123893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 39437208 - 39437152
Alignment:
Q  41 tgcagttatgtatgtgatgtacctaactcgactctatatgcacgtggtaccagtttt 97  Q
    ||||||||||||||  ||||  ||||||||||| |||||||| |||||||| |||||    
T  39437208 tgcagttatgtatgcaatgtctctaactcgactttatatgcatgtggtaccggtttt 39437152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 33017213 - 33017305
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| |||||||| |   ||||| |||| || ||||| |||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  33017213 taacccacttgggttggccttgtcatattggcttggaacctggaagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatt 33017305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 35690129 - 35690049
Alignment:
Q  310 gttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||||| ||||  |||||| ||| ||||||| |||||||||||| ||||||||||||||| || |||||    
T  35690129 gttggcctagtggtattggcttgggatctgggtgtttgctcctcctcaaggtctcaggttcgattctctctggtgtcaatt 35690049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 968362 - 968453
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||| | ||||||| ||||  | ||||  |||||||||| ||| |||||||| ||||||||||||| ||||||||||    
T  968362 aacccacttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctccgatgccaatt 968453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 18540298 - 18540389
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||| ||||||| ||||  | ||||  |||| || || |||||||||||| ||||||||||||||| ||||||||    
T  18540298 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtacttctcctcaaggtctcaggttcgattctctctggtgccaatt 18540389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 390
Target Start/End: Complemental strand, 8794419 - 8794330
Alignment:
Q  301 cccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||  ||||| ||| ||||||| |||| || ||||| |||||||||| |||| ||||||| ||||||||||||||| | ||||||    
T  8794419 cccacttggattggcatagtggtattggcttggaacctggaagtgtgctcctcctcagggtctcaggttcgattctctctggtaccaatt 8794330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 23361727 - 23361634
Alignment:
Q  297 ttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||||| |||| ||| | ||||||||||||  || |||  |||||||||| |||||||||||| |||| |||||||||| || |||||    
T  23361727 ttaacccacttgggttgacctggtggtattgacttgggatatgggagtgtgctcctcctcaaggtctcaggttcaattctctctggtgtcaatt 23361634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 379
Target Start/End: Original strand, 3624582 - 3624660
Alignment:
Q  301 cccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    |||||||| |||||||||| ||||||| ||||  | ||||  ||||||||||  ||||||||||| |||||||||||||    
T  3624582 cccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctcaggttcgattctctc 3624660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 16852340 - 16852418
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctc 377  Q
    |||||||||| |||||||||| ||||||| ||||  | ||||  |||||||||| ||| |||||||| |||||||||||    
T  16852340 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctc 16852418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 19703563 - 19703485
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctc 377  Q
    |||||||||| |||||||||| ||||||| ||||  | |||   |||||||||| |||||||||||| |||||||||||    
T  19703563 aacccacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctc 19703485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 28783060 - 28783138
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctc 377  Q
    |||||||||| |||||| | | ||||||| ||||| | ||||  |||||||||| |||||||||||| |||||||||||    
T  28783060 aacccacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcatgttcgattctc 28783138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 40387577 - 40387631
Alignment:
Q  43 cagttatgtatgtgatgtacctaactcgactctatatgcacgtggtaccagtttt 97  Q
    ||||||||||||  ||||  |||||||||||||||||||| ||||||||||||||    
T  40387577 cagttatgtatgcaatgtttctaactcgactctatatgcatgtggtaccagtttt 40387631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 6536564 - 6536611
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||||| |||| |||||||||| ||||||||    
T  6536564 gtgtgctcctcctcaaggtctcaggttcaattctctctggtgccaatt 6536611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 9882311 - 9882365
Alignment:
Q  43 cagttatgtatgtgatgtacctaactcgactctatatgcacgtggtaccagtttt 97  Q
    ||||||||||||  ||||  |||||||||||||||||||| |||||||| |||||    
T  9882311 cagttatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggtttt 9882365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 1157081 - 1157150
Alignment:
Q  321 ggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||||| || ||| | |||||||||||||  | ||||||||||| |||||||| ||| ||||||    
T  1157081 ggtattgacttggaacctgaaagtgtgctccttcttgatgtctcaagttcaattctctccgataccaatt 1157150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 390
Target Start/End: Original strand, 2203494 - 2203583
Alignment:
Q  301 cccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||| |||||||||| ||||||| ||||  | ||||  |||||||||| |||||||||||| | || |||||| | | ||||||||    
T  2203494 cccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcagggtcaattctccccggtgccaatt 2203583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 3305218 - 3305173
Alignment:
Q  345 gtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||| ||||||||||||| ||||||| |||||| ||||||||    
T  3305218 gtgctcctcctcaaggtctcaaattcgattatctctggtgccaatt 3305173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 11492127 - 11492070
Alignment:
Q  321 ggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctct 378  Q
    ||||||| ||||| ||||||  |||||||||||||| |||||| | ||||||||||||    
T  11492127 ggtattggcttgagatctgggagtgtgctccttctcgaggtcttaggttcgattctct 11492070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 11942932 - 11942864
Alignment:
Q  321 ggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||| ||||| |||||||  ||||||| | || ||||||||| |||| |||||||||||||||||||    
T  11942932 ggtattggcttgagatctggaaatgtgctcttccttaaggtctca-gttcaattctctctgatgccaatt 11942864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 384
Target Start/End: Complemental strand, 24675544 - 24675503
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctctgatg 384  Q
    |||||||||||||||||||||||  ||||||| |||||||||    
T  24675544 gtgtgctccttctcaaggtctcagattcgattttctctgatg 24675503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 1216744 - 1216784
Alignment:
Q  57 atgtacctaactcgactctatatgcacgtggtaccagtttt 97  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
T  1216744 atgtccctaactcgactctatatgcatgtggtaccggtttt 1216784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 20994534 - 20994442
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctcct-tctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||| ||||||||||||  | ||||  ||||||||||  ||||| |||||| | |||||| |||||| | ||||||    
T  20994534 aacccacttgggttggcctagtggtattgacttgggacctgggagtgtgctcctccctcaaagtctcaggatcgattatctctggtaccaatt 20994442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 35287715 - 35287807
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| || ||||| | ||| ||| ||||| || | |  |||||||||| |||||||| ||| ||||||||||||| | ||||||||    
T  35287715 taacccacttgggtaggcctggtggtgttggcttgagattttggagtgtgctcctcctcaaggtatcatgttcgattctctccggtgccaatt 35287807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 12188379 - 12188288
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||| ||||||| ||||  | ||||  |||||||||| |||||||| ||||||||||||||||||  ||||||||    
T  12188379 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtttcaagttcgattctctctagtgccaatt 12188288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 378
Target Start/End: Complemental strand, 32613214 - 32613137
Alignment:
Q  301 cccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctct 378  Q
    |||||||| |||||||| | ||||||||||||   |||||  ||||||||||||||||| ||||| ||||||||||||    
T  32613214 cccacttgggttggcctggtggtattgacttggggtctgggagtgtgctccttctcaagatctcatgttcgattctct 32613137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 33549104 - 33549195
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||| || | ||||||| ||||  | ||||  |||||||||| ||| |||||||| ||||||||||||| ||||||||||    
T  33549104 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatt 33549195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 12234583 - 12234503
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    |||||||||  |||||||| | ||||||||||||  | ||||  ||||||||| |||| |||||||| |||||||||||||    
T  12234583 aacccacttaggttggcctggtggtattgacttgggacctgggagtgtgctccctctcgaggtctcaggttcgattctctc 12234503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 24256851 - 24256807
Alignment:
Q  346 tgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||| |||||||||||||||||||||||||||||| || |||||    
T  24256851 tgctcattctcaaggtctcaagttcgattctctctggtgtcaatt 24256807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 28841458 - 28841494
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    |||||||||| ||||||||||||||||||||||||||    
T  28841458 gtgtgctcctcctcaaggtctcaagttcgattctctc 28841494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 3779339 - 3779430
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||  |||| ||||| ||||||| ||||| |  |||  |||||||||||||||||||||||  ||| |||| |||||||| |||||    
T  3779339 aacccacttaggttgacctagtggtattggcttgagacttgggagtgtgctccttctcaaggtctcagattcaattccctctgatgtcaatt 3779430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 9583410 - 9583456
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||||||||| |||||||||||||||| ||||||||    
T  9583410 gtgtgctcct-ctcaaggtctccagttcgattctctctggtgccaatt 9583456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 379
Target Start/End: Original strand, 3715450 - 3715532
Alignment:
Q  297 ttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    |||||||| ||  ||||| |||| ||||||||||||| ||||||  || |||| ||  || ||||||||||||||||||||||    
T  3715450 ttaacccattttggttgggctagtggtattgacttgagatctgggagtatgcttctcgtcgaggtctcaagttcgattctctc 3715532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 6776679 - 6776601
Alignment:
Q  303 cacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctg 381  Q
    |||||| |||||||| | ||||||| ||||  ||||||  |||||||||| ||| | |||||||||| |||||||||||    
T  6776679 cacttgggttggcctggtggtattggcttgggatctgggggtgtgctcctcctcgatgtctcaagtttgattctctctg 6776601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 19770277 - 19770223
Alignment:
Q  43 cagttatgtatgtgatgtacctaactcgactctatatgcacgtggtaccagtttt 97  Q
    ||||||||||||  ||||  |||||||||||||||||||| |||||||| |||||    
T  19770277 cagttatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggtttt 19770223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 379
Target Start/End: Complemental strand, 13227235 - 13227154
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    ||||||||||| |||||||  | |||||||   ||| ||||||  |||||||||| ||| | ||||||||||||||||||||    
T  13227235 taacccacttgggttggccatgtggtattggtatgagatctgggagtgtgctcctcctcgaagtctcaagttcgattctctc 13227154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 28028583 - 28028620
Alignment:
Q  353 tctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  28028583 tctcaaggtctcatgttcgattctccctgatgccaatt 28028620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 34786507 - 34786450
Alignment:
Q  322 gtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    |||||| ||||  ||||||  |||||||||||||| | ||||||||||||||||||||    
T  34786507 gtattggcttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 34786450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 2616476 - 2616556
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    |||||| ||| |||||||||| ||||||  |||||    |||| ||||||||||  ||||||||||||||||| |||||||    
T  2616476 aacccatttgggttggcctagtggtattagcttgagtcatggaagtgtgctcctcttcaaggtctcaagttcgtttctctc 2616556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 28843387 - 28843347
Alignment:
Q  108 atattcaaatattcacatcttcgcataacacatcgtcaaat 148  Q
    ||||||||||||||| ||||||  |||||||||||||||||    
T  28843387 atattcaaatattcatatcttcatataacacatcgtcaaat 28843347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 27093437 - 27093346
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||||| ||||||| |||| ||  |||  |||||||||| |||||||||||| ||| ||||||||||| ||||||||    
T  27093437 aacccacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggtttgattctctctggtgccaatt 27093346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 37788541 - 37788450
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||||| || |||||||||||| || || |  |||||||||| |||||||||||| ||||||||||||||  ||||||||    
T  37788541 aacccacttgggttggcccagtggtattgacttggaacctaggagtgtgctcctcctcaaggtctcaggttcgattctctctagtgccaatt 37788450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 46518628 - 46518719
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||| ||| ||||||| ||||  ||||||  |||||||||| |||||||| ||| ||| ||||||||||||||||||||    
T  46518628 aacccacttgggttggcatagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggtttgattctctctgatgccaatt 46518719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 14186647 - 14186727
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctc 379  Q
    ||||||||||| |||||||||| ||||||| ||||  | ||||| |||||||||| |||||||||||| |||||||||||||    
T  14186647 taacccacttgggttggcctagtggtattgtcttgggacctgga-gtgtgctcctcctcaaggtctcaggttcgattctctc 14186727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 388
Target Start/End: Complemental strand, 16354968 - 16354879
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaa 388  Q
    |||||||||| |||||||||| ||||||| |||| || |||   |||||||||| |||| ||||||| ||||||||||||||| ||||||    
T  16354968 aacccacttgggttggcctagtggtattggcttggaacctgtgagtgtgctcctcctcagggtctcaggttcgattctctctggtgccaa 16354879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 390
Target Start/End: Original strand, 53412948 - 53413036
Alignment:
Q  302 ccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||| ||||| |||| ||||||| |||| || ||||  |||||||||| |||||||||||| |||| |||||||||| ||||||||    
T  53412948 ccacttgggttggtctagtggtattggcttgtaacctgggagtgtgctcctcctcaaggtctcaggttcaattctctctggtgccaatt 53413036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 30311306 - 30311397
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||| || |||||||||| ||||| | ||||  ||||||  |||||||||| |||||||||||| |||||||||||| || ||||||||    
T  30311306 aacccacctgggttggcctagtggtataggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattctctttggtgccaatt 30311397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 389
Target Start/End: Complemental strand, 49494223 - 49494132
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaat 389  Q
    |||| |||||| ||| |||||| |||||||||||||||| |||  |||||||| | ||| |||||||| ||| ||||||| |||||||||||    
T  49494223 taactcacttgggttagcctagtggtattgacttgaaatttgggagtgtgctcttcctcgaggtctcaggtttgattctccctgatgccaat 49494132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 18694814 - 18694760
Alignment:
Q  38 acttgcagttatgtatgtgatgtacctaactcgactctatatgcacgtggtacca 92  Q
    |||||||||||||||||  |||| ||||||||||||||||||||| |||||||||    
T  18694814 acttgcagttatgtatgcaatgtccctaactcgactctatatgcatgtggtacca 18694760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 18710333 - 18710279
Alignment:
Q  38 acttgcagttatgtatgtgatgtacctaactcgactctatatgcacgtggtacca 92  Q
    |||||||||||||||||  |||| ||||||||||||||||||||| |||||||||    
T  18710333 acttgcagttatgtatgcaatgtccctaactcgactctatatgcatgtggtacca 18710279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 374
Target Start/End: Original strand, 8170671 - 8170747
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgatt 374  Q
    ||||||| ||| |||||||||| ||||||| |||||||  |||  |||||||||| |||||||||||| ||||||||    
T  8170671 taacccatttgggttggcctagtggtattggcttgaaacttgggagtgtgctcctactcaaggtctcaggttcgatt 8170747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 8796122 - 8796078
Alignment:
Q  346 tgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    
T  8796122 tgctcctcctcaaggtctcaagttcgattctctctgatgctaatt 8796078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 4222141 - 4222232
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||| ||| ||||||| ||||  ||||||  |||||||||| ||||| |||| | ||||||||||||||| || |||||    
T  4222141 aacccacttgggttggcttagtggtattggcttgggatctgggagtgtgctcctcctcaaagtcttaggttcgattctctctggtgtcaatt 4222232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 8368875 - 8368797
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctc 377  Q
    |||||| ||| |||||||||| ||||||||||||||| ||||  |||||||| | ||| |||||||| ||| |||||||    
T  8368875 aacccaattgagttggcctagtggtattgacttgaaacctggtagtgtgctcatcctcgaggtctcaggtttgattctc 8368797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 34062626 - 34062533
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctc--cttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||||| || | ||||| |||||||| |||  ||||||||  || |||||||||||| |||| |||||||||| ||||||||    
T  34062626 aacccacttgggttggcccagtgatattggcttgaaatttgggagtgtgctctcctcctcaaggtctcaggttcaattctctctggtgccaatt 34062533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 39253741 - 39253787
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctctgatgccaat 389  Q
    ||||||||||  ||||||||||| |||||||||||||||||||||||    
T  39253741 gtgtgctcctcttcaaggtctcaggttcgattctctctgatgccaat 39253787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 390
Target Start/End: Complemental strand, 28703481 - 28703389
Alignment:
Q  298 taacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||| ||||| | || | ||||  ||||  ||||||  ||||||||||  ||||||||||| ||||||||||||||| ||||||||    
T  28703481 taacccacttgggttggtccagtgatattagcttgggatctgggagtgtgctcctcttcaaggtctcaggttcgattctctctggtgccaatt 28703389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 36010786 - 36010830
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctctgatgcca 387  Q
    |||||||||| ||||| |||||||||||||||||||||| |||||    
T  36010786 gtgtgctcctcctcaaagtctcaagttcgattctctctggtgcca 36010830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 5499483 - 5499392
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||| | ||||||||||||| |||||   |||||||||| || ||||||| | |||| |||||| | | ||||||||    
T  5499483 aacccacttgggttggcctggtggtattgacttgagatctgagagtgtgctcctccttaaggtctaaggttctattctccccggtgccaatt 5499392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 15048137 - 15048046
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||| ||  ||||| | ||||  ||||||   ||||||||| |||||||||||| |||||||| |||||| ||||||||    
T  15048137 aacccacttgggttggcttaatggtataggcttgggatctgggaatgtgctcctcctcaaggtctcaggttcgattatctctggtgccaatt 15048046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 29563922 - 29563985
Alignment:
Q  321 ggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatg 384  Q
    ||||||| ||||| ||||||| ||||||| || ||| | |||||| ||||||||||||||||||    
T  29563922 ggtattggcttgagatctggaagtgtgcttctcctcgaagtctcaggttcgattctctctgatg 29563985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 3289522 - 3289576
Alignment:
Q  38 acttgcagttatgtatgtgatgtacctaactcgactctatatgcacgtggtacca 92  Q
    ||||| |||||||||||  ||||  |||||||||||||||||||| |||||||||    
T  3289522 acttgtagttatgtatgcaatgtctctaactcgactctatatgcatgtggtacca 3289576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 18539359 - 18539305
Alignment:
Q  43 cagttatgtatgtgatgtacctaactcgactctatatgcacgtggtaccagtttt 97  Q
    ||||||||||||  ||||  |||||||||||||||||||| |||||||| |||||    
T  18539359 cagttatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggtttt 18539305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 373
Target Start/End: Complemental strand, 39976463 - 39976433
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgat 373  Q
    |||||||||||||||||||||||||||||||    
T  39976463 gtgtgctccttctcaaggtctcaagttcgat 39976433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 47454692 - 47454602
Alignment:
Q  300 acccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||| ||||  |||| ||||||| ||||| |||| |  |||||||||| ||| |||||||| ||||||||||| |  |||||||||    
T  47454692 acccacttgggttgttctagtggtattggcttgagatcttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatt 47454602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 4844565 - 4844496
Alignment:
Q  321 ggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||||  ||||||  |||||||||| ||| |||||||| | ||||||||||| | ||||||||    
T  4844565 ggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatt 4844496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 4870261 - 4870192
Alignment:
Q  321 ggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||||  ||||||  |||||||||| ||| |||||||| | ||||||||||| | ||||||||    
T  4870261 ggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatt 4870192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 2709388 - 2709468
Alignment:
Q  310 gttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| |||||||  |||  ||||||| || ||||||| ||| |||| | | ||| ||||||||||||||||||||    
T  2709388 gttggcctagtggtattgtgttgggatctggaagtatgctcctcctcgaggttttaggtttgattctctctgatgccaatt 2709468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 390
Target Start/End: Complemental strand, 3427594 - 3427538
Alignment:
Q  334 aatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||  |||||||||| ||||||||||||  |||||||||||||  ||||||||    
T  3427594 aatctgggagtgtgctcctcctcaaggtctcagattcgattctctctagtgccaatt 3427538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 358 - 390
Target Start/End: Complemental strand, 39041998 - 39041966
Alignment:
Q  358 aggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||||||||||||||||| ||||||||    
T  39041998 aggtctcaagttcgattctctctggtgccaatt 39041966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 41711 - 41618
Alignment:
Q  297 ttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||||| |||||||||| ||||||| ||||| |||||   || ||||||| ||| |||||||| |||| ||||||||||||| |||||    
T  41711 ttaacccacttgggttggcctagtggtattggcttgagatctgagagtatgctcctcctcgaggtctcaggttcaattctctctgatgtcaatt 41618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 390
Target Start/End: Complemental strand, 95044 - 94956
Alignment:
Q  302 ccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||| |||||||||| ||||||| |||| || ||||  |||||||||| |||||||||||| |||| ||| |||||| ||||||||    
T  95044 ccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctcaggttcaattatctctggtgccaatt 94956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 42596 - 42505
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||| ||| |||||||||| |||||||||||| |||||||  || ||||||| ||||  |||||| |||||||||||| || ||||||||    
T  42596 aacccagttgggttggcctagtggtattgacttggaatctgggagtatgctcctcctcagagtctcaggttcgattctctttggtgccaatt 42505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 12500 - 12406
Alignment:
Q  297 ttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctc-tgatgccaatt 390  Q
    |||||||| ||| |||||||| | ||||||||||||||| ||| | ||||| |||| ||||| || ||||||||||||||| | |||||||||||    
T  12500 ttaacccatttgggttggcctggtggtattgacttgaaacctgaaagtgtgatcctcctcaaagtttcaagttcgattctcccttgatgccaatt 12406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 22828 - 22734
Alignment:
Q  297 ttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctc-tgatgccaatt 390  Q
    |||||||| ||| |||||||| | ||||||||||||||| ||| | ||||| |||| ||||| || ||||||||||||||| | |||||||||||    
T  22828 ttaacccatttgggttggcctggtggtattgacttgaaacctgaaagtgtgatcctcctcaaagtttcaagttcgattctcccttgatgccaatt 22734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 13100 - 13031
Alignment:
Q  321 ggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||| ||||| ||||||  |||||||||| |||||||||||| ||||||||||||| |||| |||||    
T  13100 ggtattggcttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctctccgatgtcaatt 13031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 35467 - 35374
Alignment:
Q  297 ttaacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||||  ||| ||| || ||||||| |||| ||||| |  || ||||||| |||||||||| |||||||||| |||||||||||||||    
T  35467 ttaacccacttcggtttgcccagtggtattggcttggaatctaggagtatgctcctcctcaaggtcttaagttcgattatctctgatgccaatt 35374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 334 - 390
Target Start/End: Complemental strand, 81605 - 81549
Alignment:
Q  334 aatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||| |||||||||| ||||||||||||  |||||||||| ||||||||||||    
T  81605 aatctggaagtgtgctcctcctcaaggtctcagattcgattctccctgatgccaatt 81549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 15399 - 15308
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||||||||| ||||| || | ||||||| ||||  | ||||  |||||||||| ||| |||||||| ||||||||||||| ||||||||||    
T  15399 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatt 15308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 381
Target Start/End: Complemental strand, 20027 - 19956
Alignment:
Q  310 gttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctg 381  Q
    |||||||||| ||||||| |||| || ||||  || ||||||| |||||||||||| |||||||||||||||    
T  20027 gttggcctagtggtattggcttggaacctgggagtatgctcctcctcaaggtctcaggttcgattctctctg 19956  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 221840 - 221895
Alignment:
Q  37 tacttgcagttatgtatgtgatgtacctaactcgactctatatgcacgtggtacca 92  Q
    ||||||||||||||||||  ||||  |||||||||||||||||||| |||||||||    
T  221840 tacttgcagttatgtatgcaatgtcactaactcgactctatatgcatgtggtacca 221895  T

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Target: scaffold0281 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 641 - 697
Alignment:
Q  41 tgcagttatgtatgtgatgtacctaactcgactctatatgcacgtggtaccagtttt 97  Q
    ||||||||||||||  ||||  |||||||||||||||||||| |||||||| |||||    
T  641 tgcagttatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggtttt 697  T

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Target: scaffold0238 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 2740 - 2696
Alignment:
Q  346 tgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||| |||||||||||| ||||||||||||||| ||||||||    
T  2740 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatt 2696  T

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Target: scaffold0517 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 7802 - 7711
Alignment:
Q  299 aacccacttgcgttggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    |||| ||||| ||||| || | ||||||| ||||| | ||| | |||||||||| || |||||||||||||||||||| || | ||||||||    
T  7802 aaccaacttgggttggtctggtggtattggcttgagacctgaaagtgtgctcctccttaaggtctcaagttcgattctatccggtgccaatt 7711  T

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Target: scaffold0126 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Complemental strand, 25379 - 25332
Alignment:
Q  343 gtgtgctccttctcaaggtctcaagttcgattctctctgatgccaatt 390  Q
    ||||||||||||||||||||||| |||||||| |||||| || |||||    
T  25379 gtgtgctccttctcaaggtctcaggttcgattatctctggtgtcaatt 25332  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 106752 - 106806
Alignment:
Q  43 cagttatgtatgtgatgtacctaactcgactctatatgcacgtggtaccagtttt 97  Q
    ||||||||||||  ||||  |||||||||||||||||||| |||||||| |||||    
T  106752 cagttatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggtttt 106806  T

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Target: scaffold0299 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 11541 - 11610
Alignment:
Q  312 tggcctaggggtattgacttgaaatctggatgtgtgctccttctcaaggtctcaagttcgattctctctg 381  Q
    |||||| | ||||||| ||||  ||||||  |||||||||| ||| |||||||| |||||||||||||||    
T  11541 tggcctggtggtattggcttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattctctctg 11610  T

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Target: scaffold0498 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 12091 - 12139
Alignment:
Q  43 cagttatgtatgtgatgtacctaactcgactctatatgcacgtggtacc 91  Q
    ||||||||||||  ||||  |||||||||||||||||||| ||||||||    
T  12091 cagttatgtatgcaatgtctctaactcgactctatatgcatgtggtacc 12139  T

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