View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_high_40 (Length: 379)
Name: NF1854_high_40
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 6703952 - 6703594
Alignment:
| Q |
18 |
attatggtgtgtccaccatgaatgaaactttgaa-tacttcatgcacacacttcattatcgaattacatcactactacttgttgcctcattattacttaa |
116 |
Q |
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| T |
6703952 |
attatggtgtgtccaccatgaatgcaactttgaaatacttcatgcacacacttcattatcgaattacaccactactacttgttgcctcataattacttaa |
6703853 |
T |
|
| Q |
117 |
taaaggtttgaatccttacaagaaacggggtagcatatacattggatctttaaataatcatgcatgctctta---agatatctatagctagatctgacct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6703852 |
taaaggtttgaatccttacaagaaacggggtagcatatacattggatctttaaataatcatgcatgctcttaattagatatctatagctagatctgacct |
6703753 |
T |
|
| Q |
214 |
aggataaaatttctaag-nnnnnnnaacaatgattagatgctaacttttcattttcatttagcttatgctaccataggtttagcttttcttgttccatat |
312 |
Q |
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|||||||||| |||| | ||||||||||||||| |||||| ||||||| |||||| | |||||||||||| |||||||||||||||||||||| |
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| T |
6703752 |
aggataaaatatctacgttttttttaacaatgattagatgataacttatcatttttatttagatgatgctaccatagatttagcttttcttgttccatat |
6703653 |
T |
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| Q |
313 |
atctgagatagtttaggtcttgttctcttgttctccccatttgcacaatcgttcttctc |
371 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
6703652 |
atctgagataagttaggtcttgttctcttgttctccccatttgcaccatccttcttctc |
6703594 |
T |
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