View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_high_43 (Length: 365)
Name: NF1854_high_43
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 33388993 - 33389325
Alignment:
| Q |
15 |
aaaatagctcttaaacttttcagcttcaagtgttgcactcataactaccaacttcaaatcagttctatttctaagaatttccttaagaagaccaaataac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388993 |
aaaatagctcttaaacttttcagcttcaagtgttgcactcataactaccaacttcaaatcagttctatttctaagaatttccttaagaagaccaaataac |
33389092 |
T |
|
| Q |
115 |
aaatccgtagccaaagtcctttcatgtgcctcatcaagtataattactttgtatcgctccaaaagtggatccgtcatcgcttctctcaaaagcataccat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33389093 |
aaatccgtagccaaagtcctttcatgtgcctcatcaagtataattactttgtatcgctccaaaagtggatccgtcatcgcttctctcaaaagcataccat |
33389192 |
T |
|
| Q |
215 |
ctgttagatacttcaaaactgtccttgcactactacaatcttcaaatctgatactataaccaacctcttccccaatacttacatccatctcttcagccac |
314 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33389193 |
ctgttagatacttcaaaactgtccttgaactactacaatcttcaaatctgatactataaccaacctcttccccaatacttacatccatctcttcagccac |
33389292 |
T |
|
| Q |
315 |
gcggcatgaaacagacagtgcagcaactctacg |
347 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |
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| T |
33389293 |
gcggcgtgaaacagacagtgcagcaactctacg |
33389325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 20816111 - 20815904
Alignment:
| Q |
15 |
aaaatagctcttaaacttttcagcttcaagtgttgcactcataactaccaacttcaaatcagttctatttctaagaatttccttaagaagaccaaataac |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | ||| ||| |||||| |||||||||||| ||||||| | |
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| T |
20816111 |
aaaatagctcttaaacttttcagcttcaagtgttgcactcataacaaccaacttcaagtcgggtctgtttttaagaacttccttaagaaggccaaatagc |
20816012 |
T |
|
| Q |
115 |
aaatccgtagccaaagtcctttcatgtgcctcatcaagtataattactttgtatcgctccaaaagtggatccgtcatcgcttctctcaaaagcataccat |
214 |
Q |
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| ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20816011 |
acatctgtagccaaagtcctttcatgtgcctcatcaagaataatcactttgtatcgttccaaaagtggatccgtcattgcttctctcaaaagcataccat |
20815912 |
T |
|
| Q |
215 |
ctgttaga |
222 |
Q |
| |
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|||||||| |
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| T |
20815911 |
ctgttaga |
20815904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 223 - 349
Target Start/End: Complemental strand, 20815448 - 20815322
Alignment:
| Q |
223 |
tacttcaaaactgtccttgcactactacaatcttcaaatctgatactataaccaacctcttccccaatacttacatccatctcttcagccacgcggcatg |
322 |
Q |
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|
||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
20815448 |
tacttcaaaactgtctttgcactgctacaatcttcaaatctgatgctataaccaacctcttccccaatactcacatccatctcttcagccacgcggcggg |
20815349 |
T |
|
| Q |
323 |
aaacagacagtgcagcaactctacgtg |
349 |
Q |
| |
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||||||||| |||||| |||||||||| |
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| T |
20815348 |
aaacagacattgcagccactctacgtg |
20815322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 38780034 - 38780243
Alignment:
| Q |
15 |
aaaatagctcttaaacttttcagcttcaagtgttgcactcataactaccaacttcaaatcagttctatttctaagaatttccttaagaagaccaaataac |
114 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||| |||||| |||||| ||||||||||||| | |
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| T |
38780034 |
aaaatagccctgaaacttttcagcttcaagtgttgcactcataaccaccaacttcaagtcaggtctgtttttaagaacttccttgagaagaccaaatagc |
38780133 |
T |
|
| Q |
115 |
aaatccgtagccaaagtcctttcatgtgcctcatcaagtataattactttgtatcgctccaaaagtggatccgtcatcgcttctctcaaaagcataccat |
214 |
Q |
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| ||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
38780134 |
acatctgtagccaaagtcctttcatgtgcctcatcaagaattattactttgtatcgctccaaaagtggatctgtcattgcttctctcaaaagcataccat |
38780233 |
T |
|
| Q |
215 |
ctgttagata |
224 |
Q |
| |
|
|||||||||| |
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|
| T |
38780234 |
ctgttagata |
38780243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 222 - 347
Target Start/End: Original strand, 38780374 - 38780499
Alignment:
| Q |
222 |
atacttcaaaactgtccttgcactactacaatcttcaaatctgatactataaccaacctcttccccaatacttacatccatctcttcagccacgcggcat |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||| | |
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| T |
38780374 |
atacttcaaaactgtccttgcactactacaatcttcaaatctgatgctataaccaacctcttccccaatactcacatccatttcttcagccacacggcgt |
38780473 |
T |
|
| Q |
322 |
gaaacagacagtgcagcaactctacg |
347 |
Q |
| |
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|||||||||| ||||| |||||||| |
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|
| T |
38780474 |
gaaacagacatggcagccactctacg |
38780499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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