View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1854_high_45 (Length: 345)
Name: NF1854_high_45
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 40531592 - 40531258
Alignment:
| Q |
1 |
acaacttcctaactgactcaagaaactctaggagtgtaccttagttatatagtgagcaatctcacactgtataatgtttaccagtacaattatgtaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40531592 |
acaacttcctaactgactcaagaaactctaggagtgtaccttagttatatagtgagcaatctcacactgtataatgtttaccagtacaattatgtaatcc |
40531493 |
T |
|
| Q |
101 |
cttttgcctatgctttaaaatatcccctacaaaactgaaggtgtttgctaatcagaacatttttagcttggtattattgaagcaaaattgcaaggagaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40531492 |
cttttgcctatgctttaaaatatcccctac-aaactgaaggtttttgctaatcagaacatttttagcttggtattattgaagcaaaattgcaaggagaaa |
40531394 |
T |
|
| Q |
201 |
gaggcgtagtgagtggatatgctggttgatccgttgcaagaaca-gatgcaattttatataggtacttgatatcagacgtataatttcgagcatatctta |
299 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40531393 |
gaggcgtggtgagtggatttgctgtttgatccgttgcaagaacatgatgcaattttatataggaacttgatatcagacgtataatttcgagcatatttta |
40531294 |
T |
|
| Q |
300 |
tatagtttttaatttgatatttcttctttctctctg |
335 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40531293 |
tatagtttttaatttgatatttgttctttctctctg |
40531258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University