View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1854_high_48 (Length: 336)
Name: NF1854_high_48
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_48 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 38899982 - 38900298
Alignment:
| Q |
11 |
atcatcatatcctcctcttctcttcttatattttccaatgccgtcccatcaactcgcattgatggttccatttccacaactgtcccaaccccaacccctt |
110 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38899982 |
atcatcctatccttctcttctcttcttatattttccaatgccgtcccatcaactcgcattgatgattccatttccacaactgtcccaaccccaacccctt |
38900081 |
T |
|
| Q |
111 |
caagcgaagttattgattacattgtcccagagcaaacagactttggtctcaatatgccagagaattccgcttctccagatgatttcgtttttagattaga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38900082 |
caagcgaagttattgattacattgtcccagagcaaacagactttggtctcaatatgccagagaattccgcttctccagatgatttcgtttttcgattaga |
38900181 |
T |
|
| Q |
211 |
ggatccaaacttgctaggaactgtttcagaagacattgccaagaatgccgatcctgagatcgtaaaattatgtgtcgacggagaaagtccatctctttgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38900182 |
ggatccaaacttgctaggaactgtttcagaagacattgccaagaatgccgatcctgagatcgtaaaattatgtgtcgacggagaaagtccatctctttgt |
38900281 |
T |
|
| Q |
311 |
gctgcaaccatttcatc |
327 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
38900282 |
gctgcaactatttcatc |
38900298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 175 - 327
Target Start/End: Original strand, 38898008 - 38898160
Alignment:
| Q |
175 |
ttccgcttctccagatgatttcgtttttagattagaggatccaaacttgctaggaactgtttcagaagacattgccaagaatgccgatcctgagatcgta |
274 |
Q |
| |
|
||||| |||||||||||||| || |||| || || |||||||||||||||||| | || ||| |||| ||||||||||||| ||||||||||||||| |
|
|
| T |
38898008 |
ttccgtttctccagatgattccgattttcagtttgaagatccaaacttgctaggatccattgcagcagacgttgccaagaatgctgatcctgagatcgta |
38898107 |
T |
|
| Q |
275 |
aaattatgtgtcgacggagaaagtccatctctttgtgctgcaaccatttcatc |
327 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
38898108 |
aaattatgtgtcaacggagaaaatccagctctttgtgctgcaaccatttcatc |
38898160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 38897824 - 38897882
Alignment:
| Q |
12 |
tcatcatatcctcctcttctcttcttatattttccaatgccgtcccatcaactcgcatt |
70 |
Q |
| |
|
||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||| |||| |
|
|
| T |
38897824 |
tcatcctatccttctcttctcttcttctatcttccaatgccgtcccatcaactcacatt |
38897882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University