View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_high_52 (Length: 329)
Name: NF1854_high_52
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 44519256 - 44519518
Alignment:
| Q |
18 |
tgaactcccagaagataatattaggcaataaaataaaggtatgatgagtcgtcttcgaaagcactttgatttgatgataggtcatcatggggtgtgatat |
117 |
Q |
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| T |
44519256 |
tgaactcccataatataatattaggcaataaaataaaggtatgatgagtcgtcttcgaaagcactttg-----atgataggtcatcatggggtgtgatat |
44519350 |
T |
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| Q |
118 |
gtgcagacgtgaagtgtaggaggacgttgttattggtggagtcggtgaggtggagatgtatactttgtaccatctgttgtactgctcgatactttggtcc |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44519351 |
gtgcagacgtgaagtgcaggaggacgttgttattggtggagtcggtgaggtggagatgtatactttgtaccatctgttgtactgctcgatactttggtcc |
44519450 |
T |
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| Q |
218 |
atttcattttcatgatgccatagcccacaaatatctttcagcacttttcatataaatcatttgtttac |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44519451 |
atttcattttcatgatgccatagcccacaaatatctttcagcacttttcatataaatcatttgtttac |
44519518 |
T |
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