View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1854_high_60 (Length: 290)

Name: NF1854_high_60
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1854_high_60
NF1854_high_60
[»] chr7 (1 HSPs)
chr7 (18-204)||(20074077-20074262)
[»] chr6 (1 HSPs)
chr6 (18-199)||(2715063-2715241)
[»] chr5 (2 HSPs)
chr5 (137-204)||(40306440-40306506)
chr5 (18-97)||(40306556-40306634)
[»] chr8 (1 HSPs)
chr8 (219-266)||(31547678-31547726)
[»] chr3 (2 HSPs)
chr3 (151-209)||(23306343-23306401)
chr3 (19-95)||(46208728-46208805)
[»] chr4 (1 HSPs)
chr4 (146-204)||(35443163-35443221)
[»] chr2 (2 HSPs)
chr2 (148-204)||(19579857-19579913)
chr2 (144-204)||(43134753-43134813)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 20074262 - 20074077
Alignment:
Q  18 gcttcttggcacgatggccagaagcacgacacacacacggctatttgaagccgttagataaccccatcaacatgttttccnnnnnnnnnnnnnnacttag 117  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||              ||||||    
T  20074262 gcttcttggcacgatggccagaagcgcgacacacacacgactatttgaagccgttagataaccccatgaacatgttttcc-tttttttatttttacttag 20074164  T
Q  118 tatatcttccgcnnnnnnngccatgcctttaacatgcatgtcgtggaatctcgtgtggttgaggtgtcgtgctatatagcacttccc 204  Q
    ||||||||||||       ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  20074163 tatatcttccgctttttttgccatgcctttaacatgcatgtcatggaatcttgtgtggttgaggtgtcgtgctatatagcacttccc 20074077  T

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Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 2715063 - 2715241
Alignment:
Q  18 gcttcttggcacgatggccagaagcacgacacacacacggctatttgaagccgttagataaccccatcaacatgttttccnnnnnnnnnnnnnnacttag 117  Q
    |||||||||||| |||||||||||||||||||||||  | ||||||||||||||||||||||||||| ||||||||||||              ||||||    
T  2715063 gcttcttggcacaatggccagaagcacgacacacac--gactatttgaagccgttagataaccccatgaacatgttttcctttttttattttt-acttag 2715159  T
Q  118 tatatcttccgcnnnnnnngccatgcctttaacatgcatgtcgtggaatctcgtgtggttgaggtgtcgtgctatatagcac 199  Q
    ||||||||| ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2715160 tatatcttctgctttttttgccatgcctttaacatgcatgtcgtggaatctcgtgtggttgaggtgtcgtgctatatagcac 2715241  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 40306506 - 40306440
Alignment:
Q  137 gccatgcctttaacatgcatgtcgtggaatctcgtgtggttgaggtgtcgtgctatatagcacttccc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40306506 gccatgcctttaacatgcatgtcgtggaatctcgtgtggttga-gtgtcgtgctatatagcacttccc 40306440  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 40306634 - 40306556
Alignment:
Q  18 gcttcttggcacgatggccagaagcacgacacacacacggctatttgaagccgttagataaccccatcaacatgttttcc 97  Q
    |||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  40306634 gctttttgacacgatggtcagaagcacgacacacacacgactatttgaagccgttagatca-cccatcaacatgttttcc 40306556  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 31547678 - 31547726
Alignment:
Q  219 taaatatttgctaccaattagcacaac-acgaaattctgagcaagtttc 266  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31547678 taaatatttgctaccaattagcacaacgacgaaattctgagcaagtttc 31547726  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 23306343 - 23306401
Alignment:
Q  151 atgcatgtcgtggaatctcgtgtggttgaggtgtcgtgctatatagcacttcccgtttg 209  Q
    |||||||||||  ||| ||| || ||| |||||||||||||||||||||||||||||||    
T  23306343 atgcatgtcgtcaaatttcgcgtagttcaggtgtcgtgctatatagcacttcccgtttg 23306401  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 46208805 - 46208728
Alignment:
Q  19 cttcttggcacgatggccag-aagcacgacacacacacggctatttgaagccgttagataaccccatcaacatgtttt 95  Q
    ||||||| |||||||||||| ||||| ||||| || |||  ||||| |||||||||||| ||| ||||||||||||||    
T  46208805 cttcttgacacgatggccagcaagcatgacactcatacgattatttaaagccgttagatcacctcatcaacatgtttt 46208728  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 35443163 - 35443221
Alignment:
Q  146 ttaacatgcatgtcgtggaatctcgtgtggttgaggtgtcgtgctatatagcacttccc 204  Q
    |||| ||||||||||| |||| |||||||||| |  ||||||||| |||||||||||||    
T  35443163 ttaatatgcatgtcgtcgaatttcgtgtggtttatatgtcgtgctgtatagcacttccc 35443221  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 19579857 - 19579913
Alignment:
Q  148 aacatgcatgtcgtggaatctcgtgtggttgaggtgtcgtgctatatagcacttccc 204  Q
    ||||||||||||||  ||| || ||| ||| |||| |||||||||||||||||||||    
T  19579857 aacatgcatgtcgtcaaatttcttgttgtttaggtatcgtgctatatagcacttccc 19579913  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 43134753 - 43134813
Alignment:
Q  144 ctttaacatgcatgtcgtggaatctcgtgtggttgaggtgtcgtgctatatagcacttccc 204  Q
    |||||| ||||||||||| |||| |||||||||| |  ||||||||| ||||||| |||||    
T  43134753 ctttaatatgcatgtcgtcgaatttcgtgtggtttatatgtcgtgctgtatagcatttccc 43134813  T

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