View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_high_65 (Length: 279)
Name: NF1854_high_65
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_65 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 39491366 - 39491106
Alignment:
| Q |
1 |
ggttgaaataaacaatgacaaatatgaaacgactctaggaatcaaccaataggtgtcacgaaaggagaggttgtaagtagattctaattttgacgtggct |
100 |
Q |
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| T |
39491366 |
ggttgaaataaacaatgacaaatataaaacgactctaggaatcaaccaataggtgtcacgaaaggagaggttgtaagtagattctaattttgacgtggct |
39491267 |
T |
|
| Q |
101 |
cttatttcttctaattaacgatcgatgcaacgaattttatgttttcttgcgcaattctttctcatttccttggcctatatatgtaaccccaccaccttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39491266 |
cttatttcttctaattaacgatcgatgcaacgaattttatgttttcttgtgc-attctttctcatttccttggcctatatatgtaaacccaccaccttgt |
39491168 |
T |
|
| Q |
201 |
ttctaagacactgcaacctattacaacaaaatagcttctgtctgctggaagctaaaaacacc |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39491167 |
ttctaagacactgcaacctattacaacaaaatagcttctgtctgctggaagctcaaaacacc |
39491106 |
T |
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