View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_high_69 (Length: 274)
Name: NF1854_high_69
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_69 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 106 - 264
Target Start/End: Original strand, 33232595 - 33232753
Alignment:
| Q |
106 |
agcttcacataaaatttgatgtgcctaaaattgcatctaataaactcttaagtataattaagatgataaaaaactgcatgaataatttataaactaagct |
205 |
Q |
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| T |
33232595 |
agcttcacataaaatttgatgtgcctaaaattgcatctaataagctcttaagtataattaagatgataaaaaactgcatgaataatttataaactaagct |
33232694 |
T |
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| Q |
206 |
tacaattttcatttctaaacatttaatttatatttggaattttggattcacatttcatc |
264 |
Q |
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| T |
33232695 |
tacaattttcatttctaaacatttaatttatatttggaattttggattcacatttcatc |
33232753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 33232536 - 33232607
Alignment:
| Q |
17 |
atatacgatatataataagacaaatatcataatgttattttatgtaaatgtcgtggtccagcttcacataaa |
88 |
Q |
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| T |
33232536 |
atatacgatatataataagacaaatatcataatgttattttatgtaaatgtcgtggtccagcttcacataaa |
33232607 |
T |
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