View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_high_71 (Length: 263)
Name: NF1854_high_71
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_71 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 23896430 - 23896198
Alignment:
| Q |
13 |
agaacctgtggttatcgatgacattcaaatccctgtcaacacaagtatgaaaaaccctaacaacaatgaatacgacaacctttaccttgacatgaacggc |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23896430 |
agaacctgtggttatcgatggcattcaaatccctgtcaacacaagtatgaaaaaccctaacaacaatgaatacgacaacctttaccttgacatgaacggc |
23896331 |
T |
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| Q |
113 |
gtcattcacccttgcttccaccccgagaatagggtaaaatctttttctttcgattattatcattactattgctattattggacacgtaaaaacttactct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23896330 |
gtcattcacccttgcttccaccccgagaatagggtaaaatctttttctttcgattattatcattactattgctattattggacacgtaaaaacttacttg |
23896231 |
T |
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| Q |
213 |
aactatttatttgattgcttgcagccatctcct |
245 |
Q |
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||| ||||||||||||||||||||||||||||| |
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| T |
23896230 |
aaccatttatttgattgcttgcagccatctcct |
23896198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 23184396 - 23184165
Alignment:
| Q |
13 |
agaacctgtggttatcgatgacattcaaatccctgtcaacacaagtatgaaaaaccctaacaacaatgaatacgacaacctttaccttgacatgaacggc |
112 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23184396 |
agaaccagtggttatcgatggcattcaaatccctgtcaacacaagtatgaaaaaccctaacaacaatgaatacgacaacctttaccttgacatgaacggc |
23184297 |
T |
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| Q |
113 |
gtcattcacccttgcttccaccccgagaatagggtaaaatctttttctttcgattattatcattactattgctattattggacacgtaaaaacttactct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||| | |
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| T |
23184296 |
gtcattcacccttgcttccaccccgagaatagggtaaaatatttctctttcgattattatgattactattgctattattagacacgtaaaaacgtact-t |
23184198 |
T |
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| Q |
213 |
aactatttatttgattgcttgcagccatctcct |
245 |
Q |
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|| ||||||||||||||||||||||||||||| |
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| T |
23184197 |
gacgatttatttgattgcttgcagccatctcct |
23184165 |
T |
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