View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1854_high_82 (Length: 249)
Name: NF1854_high_82
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_82 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 1329607 - 1329847
Alignment:
| Q |
1 |
tagcctacagtcatagtcataaggttagtaagcacttcattgcattcctaaacataatgtggcccnnnnnnnngtatcatttttatagtgaaaacaagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
1329607 |
tagcctacagtcatagtcataaggttagtaagcacttcattgtattcctaaacataatgtggccccaaaagaagtatcatttttatactgaaaacaagat |
1329706 |
T |
|
| Q |
101 |
aattgtattaccttatgcaatttccctctaaaatctagtgtacattttctctttgcttaatgtgagtatactgctatgatctggaatctataccagacaa |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1329707 |
aattgtattaccgtatgcaatttccctctaaaatctagtgtacattttctctttgcttaatgtgagtatactgctatgatctggaatctataccagacaa |
1329806 |
T |
|
| Q |
201 |
cactgctaccattcttctaccatcatttgaagtgacctttg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1329807 |
cactgctaccattcttctaccatcatttgaagtgacctttg |
1329847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University