View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_high_89 (Length: 239)
Name: NF1854_high_89
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_89 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 45468364 - 45468503
Alignment:
| Q |
82 |
atatatgataagcgctcacgttgtaagccttcgattaattcaaaatttaacatttttgttttatattatgtaggtgatgatccaagagatgtgaaggcac |
181 |
Q |
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| T |
45468364 |
atatatgataagcgctcacgttgtaagccttcgattaattcaaaatttaacatttttgttttatattatgtaggtgatgatccaagagatgtgaaggcac |
45468463 |
T |
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| Q |
182 |
gactcaaagtgtgggcacaggcagtagcaatagcatctgc |
221 |
Q |
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| T |
45468464 |
gactcaaagtgtgggcacaggcagtagcaatagcatctgc |
45468503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 39220717 - 39220556
Alignment:
| Q |
63 |
ttttcaacttatttttgtaatatatgataagcgctcacgttgtaagccttcgattaattcaaaatttaacatttttgttt---tatattatgtaggtgat |
159 |
Q |
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| T |
39220717 |
ttttcagcttatttttataatatatgataagcgcttaagttacaagcgttggattaatttagaatttgacatttttttttatttttattatgtaggtgat |
39220618 |
T |
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| Q |
160 |
gatccaagagatgtgaaggcacgactcaaagtgtgggcacaggcagtagcaatagcatctgc |
221 |
Q |
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| T |
39220617 |
gatccaacagatgtgaaggcatgactgaaagtgtgggcacaggcagtagcaatagcatctgc |
39220556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 45468327 - 45468364
Alignment:
| Q |
1 |
tcataaacaatataaaattgtatgaaaacaatttatga |
38 |
Q |
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| T |
45468327 |
tcataaacaatataaaattgtatgaaaacaatttatga |
45468364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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